View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4211_low_5 (Length: 452)
Name: NF4211_low_5
Description: NF4211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4211_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 2 - 447
Target Start/End: Complemental strand, 46798014 - 46797569
Alignment:
| Q |
2 |
gaaatagctgattataattttaaagtatgtacgtattcatgtagtatatgatataaacaagtacacatagagatagtatccaagtgaaggtgcaatgggt |
101 |
Q |
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| T |
46798014 |
gaaatagctgattataattttaaagtatgtacgtattcatgtagtatatgatataaacaagtacacatagagatagtatccaagtgaaggtgcaatgggt |
46797915 |
T |
|
| Q |
102 |
gtcagagaagaaagagcttttttcgggattgaaatgaagttatgtgggcgcgcattcaaaaagaacaccgagtttgaagtttgtattaccaatttgtact |
201 |
Q |
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| T |
46797914 |
gtcagagaagaaagagcttttttcgggattgaaatgaagttatgtgggcgcgcattcaaaaagaacaccgagtttgaagtttgtattaccaatttgtact |
46797815 |
T |
|
| Q |
202 |
ataatttcagccttttcagaaaaatgaaaatgcaattttttctgactgagttggtatatttgcggttgagttttatacagaggagacaggtaagcagcta |
301 |
Q |
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| T |
46797814 |
ataatttcagccttttcagaaaaatgaaaatgcaattttttctgactgagttggtatatttgcggttgagttttatacagaggagacaggtaagcagcta |
46797715 |
T |
|
| Q |
302 |
ttacagcctctcacctaccttttacactctttgtacggtttcaaacttcattttctttcggataaaaaccttcatagctagatccataaggatagggttt |
401 |
Q |
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| T |
46797714 |
ttacagcctctcacctaccttttacactctttgtacggtttcaaacttcattttctttcggataaaaaccctcatagctagatccataaggatagggttt |
46797615 |
T |
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| Q |
402 |
tcaactttttcaggtgtatataactactacaatttcctttgctact |
447 |
Q |
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| T |
46797614 |
tcaactttttcaggtgtatataactactacaatttcctttgttact |
46797569 |
T |
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