View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4211_low_6 (Length: 329)

Name: NF4211_low_6
Description: NF4211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4211_low_6
NF4211_low_6
[»] chr8 (6 HSPs)
chr8 (1-313)||(15349419-15349731)
chr8 (59-129)||(4030191-4030261)
chr8 (53-109)||(12200915-12200971)
chr8 (53-109)||(12445343-12445399)
chr8 (53-92)||(12195900-12195939)
chr8 (53-92)||(12440328-12440367)
[»] chr4 (25 HSPs)
chr4 (52-314)||(48886827-48887087)
chr4 (52-314)||(48871141-48871401)
chr4 (52-314)||(48876445-48876705)
chr4 (59-216)||(7237065-7237222)
chr4 (53-129)||(45365623-45365699)
chr4 (60-129)||(45384293-45384362)
chr4 (59-111)||(7908884-7908936)
chr4 (59-220)||(37826304-37826466)
chr4 (60-129)||(48155826-48155895)
chr4 (60-215)||(48863848-48863999)
chr4 (46-95)||(49043605-49043654)
chr4 (59-111)||(7905160-7905212)
chr4 (55-111)||(45371492-45371548)
chr4 (153-220)||(48853347-48853412)
chr4 (53-189)||(50669664-50669801)
chr4 (59-129)||(7801225-7801295)
chr4 (59-129)||(7823557-7823627)
chr4 (53-87)||(49048000-49048034)
chr4 (59-100)||(7814065-7814106)
chr4 (59-132)||(48147113-48147186)
chr4 (60-93)||(48734859-48734892)
chr4 (59-111)||(7771977-7772029)
chr4 (176-216)||(7772095-7772135)
chr4 (59-111)||(7790662-7790714)
chr4 (176-216)||(7790780-7790820)
[»] chr5 (3 HSPs)
chr5 (53-220)||(29688708-29688876)
chr5 (53-174)||(9120345-9120472)
chr5 (125-220)||(29696896-29696989)
[»] chr1 (2 HSPs)
chr1 (54-129)||(24340994-24341069)
chr1 (54-129)||(24353359-24353434)
[»] chr2 (3 HSPs)
chr2 (67-129)||(29351018-29351080)
chr2 (51-88)||(21426983-21427020)
chr2 (176-220)||(29351122-29351166)
[»] chr3 (5 HSPs)
chr3 (257-310)||(11023767-11023820)
chr3 (53-93)||(11014933-11014973)
chr3 (53-109)||(47451323-47451379)
chr3 (256-310)||(11005197-11005251)
chr3 (56-93)||(11023945-11023982)
[»] chr6 (1 HSPs)
chr6 (53-126)||(21016403-21016476)
[»] chr7 (1 HSPs)
chr7 (60-88)||(30119715-30119743)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 15349419 - 15349731
Alignment:
Q  1 gttgttagagcgttccccccattgggagagtttatggggtgttagatcccacgtggctatgtatacagagtctctgctttcactccctggtgataatgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349419 gttgttagagcgttccccccattgggagagtttatggggtgttagatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgag 15349518  T
Q  101 caggcttaagaggacgacgcaaacaagaatgaagttttcagttattctccttcaccattttattgatatttataaaattatattgtattatgtactgttg 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349519 caggcttaagaggacgacgcaaacaagaatgaggttttcagttattctccttcaccattttattgatatttataaaattatattgtattatgtactgttg 15349618  T
Q  201 gatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttctgcatttgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgc 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349619 gatgactgcatttgtagggtcgtatcgtatgactttgcttgcatttctgcatttgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgc 15349718  T
Q  301 cgcatgagcttat 313  Q
    |||||||||||||    
T  15349719 cgcatgagcttat 15349731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 4030261 - 4030191
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 129  Q
    ||||| ||||||||||||||||||||||||||| | |||||||| |||||||| || ||| ||||||||||    
T  4030261 atgtacacagagtctctgctttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaa 4030191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 12200915 - 12200971
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  12200915 gtggcgatgtatacagagtctctgctttcactccctggtgatcgtgagcaggtttaa 12200971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 12445343 - 12445399
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  12445343 gtggcgatgtatacagagtctctgctttcactccctggtgatcgtgagcaggtttaa 12445399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 12195900 - 12195939
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtg 92  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  12195900 gtggccatgtatacagagtctctgctttcactccctggtg 12195939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 12440328 - 12440367
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtg 92  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  12440328 gtggccatgtatacagagtctctgctttcactccctggtg 12440367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 52 - 314
Target Start/End: Original strand, 48886827 - 48887087
Alignment:
Q  52 cgtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattct 148  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||||||||   ||| ||||| | |||||||    
T  48886827 cgtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattct 48886926  T
Q  149 ccttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttct 248  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||     |  |||||||||| || ||||| |    
T  48886927 ccttcaccattttcttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtaggg-----taatatgactttgattccatttat 48887021  T
Q  249 gcatttgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatt 314  Q
    |||| || |||||  ||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  48887022 gcatatgagggtatcatgtgtttgattgcatttgtaatatgattcagtataccgcatgagcttatt 48887087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 52 - 314
Target Start/End: Original strand, 48871141 - 48871401
Alignment:
Q  52 cgtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattct 148  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||||||||   ||| ||||| | |||||||    
T  48871141 cgtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattct 48871240  T
Q  149 ccttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttct 248  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||     |  |||||||||| || ||||| |    
T  48871241 ccttcaccattttcttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtaggg-----taatatgactttgattccattttt 48871335  T
Q  249 gcatttgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatt 314  Q
    |||| || |||||||| ||||||||||| ||||||| ||||||||||||| || |||| |||||||    
T  48871336 gcatatgagggtaatacgtgtttgattgcatttgtaatatgattcagtataccacatgtgcttatt 48871401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 52 - 314
Target Start/End: Original strand, 48876445 - 48876705
Alignment:
Q  52 cgtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattct 148  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||||||||   ||| ||||| | |||||||    
T  48876445 cgtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattct 48876544  T
Q  149 ccttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttct 248  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||     |  |||||||||| || ||||| |    
T  48876545 ccttcaccattttcttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtaggg-----taatatgactttgattccattttt 48876639  T
Q  249 gcatttgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatt 314  Q
    |||| || |||||||| ||||||||||| ||||||| ||||||||||||| || |||| |||||||    
T  48876640 gcatatgagggtaatacgtgtttgattgcatttgtaatatgattcagtataccacatgtgcttatt 48876705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 7237222 - 7237065
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaag---aatgaagttttcagttattctccttcac 155  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||| | || ||| ||||||||   ||||| ||| | |  ||||||||||||     
T  7237222 atgtatacagagtctctgctttcactccttggtgacaatgagcatgcttaa-aagatgacacaaacaagaacaatgatgttgtgaaatattctccttcat 7237124  T
Q  156 cattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgta 216  Q
      |||| || ||||||||  ||||||||||| ||||||||| |||| ||| ||||||||||    
T  7237123 tgttttctttatatttat--aattatattgttttatgtactcttggttggttgcatttgta 7237065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 45365699 - 45365623
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 129  Q
    ||||| ||||||||||||||| |||| ||||| |||||||| |||||||| |||||||| || ||| ||||||||||    
T  45365699 gtggccatgtatacagagtctttgctgtcacttcctggtgacaatgagcaagcttaagaagatgacacaaacaagaa 45365623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 45384362 - 45384293
Alignment:
Q  60 tgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 129  Q
    |||||||||||||||| ||||||||  ||||||| |||||||| |||||||| || ||| ||||||||||    
T  45384362 tgtatacagagtctctcctttcactttctggtgacaatgagcaagcttaagaagatgacacaaacaagaa 45384293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 7908884 - 7908936
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 111  Q
    |||||||| |||||||||||||||||||||||||| |||||||| | ||||||    
T  7908884 atgtataccgagtctctgctttcactccctggtgacaatgagcaagtttaaga 7908936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 37826466 - 37826304
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattctccttcac 155  Q
    |||||||| ||||||||||||||| |||||| |||    ||||| | |||||| || ||  ||||||||||   ||| ||||  |  |||||||||||||    
T  37826466 atgtatacggagtctctgctttcattccctgttgacggagagcaagtttaagaagatgatacaaacaagaagaatgaggtttcaaaatattctccttcac 37826367  T
Q  156 cattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 220  Q
    |||||| |||||||||  ||  ||||||||||||||| ||| |||| || ||| |||||||||||    
T  37826366 cattttcttgatattttcaa--ttatattgtattatgaactcttgggtgtctggatttgtagggt 37826304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 48155895 - 48155826
Alignment:
Q  60 tgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 129  Q
    |||||||||||||| ||||||||||||||||||| |||| ||| || ||||| |||  | ||||||||||    
T  48155895 tgtatacagagtctttgctttcactccctggtgacaatgtgcaagcctaagaagacatcacaaacaagaa 48155826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 48863848 - 48863999
Alignment:
Q  60 tgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatgaagttttcagttattctccttcaccatt 159  Q
    |||||||||||||||||||||||||||||  ||| | |||||| |||||||| || ||| | || ||  |||| ||||  |  |||||||||  ||||||    
T  48863848 tgtatacagagtctctgctttcactccctaatgacagtgagcaagcttaagaagatgacaccaagaatcatgaggttt--aaatattctcctggaccatt 48863945  T
Q  160 ttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgt 215  Q
    || | |||||||||  ||||||||||| ||||| ||  || | |||||||||||||    
T  48863946 ttctggatatttat--aattatattgttttatgaaccattcggtggctgcatttgt 48863999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 49043654 - 49043605
Alignment:
Q  46 atcccacgtggctatgtatacagagtctctgctttcactccctggtgata 95  Q
    |||||| |||||||| |||||||||||| ||||||||||||| |||||||    
T  49043654 atcccaagtggctatctatacagagtctttgctttcactccccggtgata 49043605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 7905160 - 7905212
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 111  Q
    |||||||| |||||||||||||||||||| |||||||| ||||| | ||||||    
T  7905160 atgtatacggagtctctgctttcactccccggtgataacgagcaagtttaaga 7905212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 45371548 - 45371492
Alignment:
Q  55 ggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 111  Q
    ||||||||||||||||||||||||||||||| || | || ||||| || ||||||||    
T  45371548 ggctatgtatacagagtctctgctttcactctctagcgacaatgatcaagcttaaga 45371492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 48853347 - 48853412
Alignment:
Q  153 caccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 220  Q
    |||||||||||||||  ||||||   |||||||||||||||||| |||||| ||||||||| ||||||    
T  48853347 caccattttattgattattataac--tatattgtattatgtacttttggatagctgcatttttagggt 48853412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 50669664 - 50669801
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatgaa----gttttcagttattct 148  Q
    ||||||||||||||||||||||| ||||||||||| | ||   |||| || | | || | || ||| |||||||||| |||    ||||| |  ||||||    
T  50669664 gtggctatgtatacagagtctctactttcactccccgctgtccatgaacaagttcaaaaagatgacacaaacaagaa-gaacaaggttttgaaatattct 50669762  T
Q  149 ccttcaccattttattgatatttataaaattatattgtatt 189  Q
    |||||||||||||||| ||||||||  ||||||||||||||    
T  50669763 ccttcaccattttatttatatttat--aattatattgtatt 50669801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 7801225 - 7801295
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 129  Q
    |||||||| ||||||||||||||||||||||| || |||||| | | |||||| || |||  |||||||||    
T  7801225 atgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa 7801295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 7823557 - 7823627
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 129  Q
    |||||||| ||||||||||||||||||||||| || |||||| | | |||||| || |||  |||||||||    
T  7823557 atgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa 7823627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 49048034 - 49048000
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccc 87  Q
    ||||||||||||||||||||| |||||||||||||    
T  49048034 gtggctatgtatacagagtctttgctttcactccc 49048000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 7814065 - 7814106
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgag 100  Q
    |||||||| ||||||||||||||||||||||| || ||||||    
T  7814065 atgtataccgagtctctgctttcactccctggggacaatgag 7814106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 48147186 - 48147113
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatga 132  Q
    |||||||| ||||||||||||||||||||| |||| |||| ||   | ||||| || ||| |||||||||||||    
T  48147186 atgtatactgagtctctgctttcactccctagtgacaatgtgctaccctaagaagatgacacaaacaagaatga 48147113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 48734892 - 48734859
Alignment:
Q  60 tgtatacagagtctctgctttcactccctggtga 93  Q
    |||||||||||||||||||||||||||| |||||    
T  48734892 tgtatacagagtctctgctttcactccccggtga 48734859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 7771977 - 7772029
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 111  Q
    ||||||||||| |||||||||||||| | |||||| |||||||| | ||||||    
T  7771977 atgtatacagaatctctgctttcactacttggtgacaatgagcatgattaaga 7772029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 7772095 - 7772135
Alignment:
Q  176 aattatattgtattatgtactgttggatggctgcatttgta 216  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  7772095 aattatattgttttatgtactcttgggtggctgcatttgta 7772135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 7790662 - 7790714
Alignment:
Q  59 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 111  Q
    ||||||||||| |||||||||||||| | |||||| |||||||| | ||||||    
T  7790662 atgtatacagaatctctgctttcactacttggtgacaatgagcatgattaaga 7790714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 7790780 - 7790820
Alignment:
Q  176 aattatattgtattatgtactgttggatggctgcatttgta 216  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  7790780 aattatattgttttatgtactcttgggtggctgcatttgta 7790820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 29688708 - 29688876
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtgataa---tgagcaggcttaagaggacgacgcaaacaagaatgaagttttcagttattctc 149  Q
    |||| |||||||||||| |||||||||||||| ||||||| | |   ||| ||||||||||| || |||||| |||||||||| |||||||  ||||| |    
T  29688708 gtggttatgtatacagaatctctgctttcacttcctggtggtgacagtgatcaggcttaagaagatgacgcagacaagaatgaggttttcaagtattccc 29688807  T
Q  150 cttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 220  Q
    ||||||||||||  |||| |||||  |||||||| |||||||||||| |||  |||||||||| |||||||    
T  29688808 cttcaccattttcatgatctttat--aattatatagtattatgtactcttgagtggctgcattcgtagggt 29688876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 9120345 - 9120472
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaac------aagaatgaagttttcagttatt 146  Q
    |||||| | |||||||||||||||||||||||||||||||| ||||| || |||||||  || ||| |||||      |||||||| ||||| |  ||||    
T  9120345 gtggctctttatacagagtctctgctttcactccctggtgacaatgaacaagcttaaggagatgacacaaacaagaagaagaatgaggttttgaaatatt 9120444  T
Q  147 ctccttcaccattttattgatatttata 174  Q
    ||||||||||||||| ||||| ||||||    
T  9120445 ctccttcaccattttcttgatttttata 9120472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 29696896 - 29696989
Alignment:
Q  125 aagaatgaagttttcagttattctccttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 220  Q
    |||||||| ||||| |  |||||| ||||||||||||  |||| |||||||  ||||||||||||||| ||| |||  | ||||||||||||||||    
T  29696896 aagaatgaggttttgaagtattcttcttcaccattttcatgatctttataa--ttatattgtattatggactcttgagtagctgcatttgtagggt 29696989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 24340994 - 24341069
Alignment:
Q  54 tggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 129  Q
    ||||||||||||| |||||| |||||||||||||| |||| |||||| | |||||||| || | | ||||||||||    
T  24340994 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaa 24341069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 24353359 - 24353434
Alignment:
Q  54 tggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 129  Q
    ||||||||||||| |||||| |||||||||||||| |||| |||||| | |||||||| || | | ||||||||||    
T  24353359 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaa 24353434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 29351018 - 29351080
Alignment:
Q  67 agagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 129  Q
    ||||||| ||||||||||||| ||||| |||||||| |||||||| || ||| ||||||||||    
T  29351018 agagtctatgctttcactccccggtgacaatgagcaagcttaagaagatgactcaaacaagaa 29351080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 21426983 - 21427020
Alignment:
Q  51 acgtggctatgtatacagagtctctgctttcactccct 88  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  21426983 acgtggccatgtatacagagtctatgctttcactccct 21427020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 29351122 - 29351166
Alignment:
Q  176 aattatattgtattatgtactgttggatggctgcatttgtagggt 220  Q
    ||||||||||||||||| ||| |||| ||| ||||||||||||||    
T  29351122 aattatattgtattatgaactcttgggtggttgcatttgtagggt 29351166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 11023820 - 11023767
Alignment:
Q  257 gggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagct 310  Q
    ||||||||||||||||||||  |||||| |||||| ||||||||| ||||||||    
T  11023820 gggtaatatgtgtttgattgtgtttgtaatatgatccagtatgccacatgagct 11023767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 11014973 - 11014933
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtga 93  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  11014973 gtggttatgtacacagagtctctgctttcactccctggtga 11014933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 47451379 - 47451323
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 109  Q
    |||| |||||| |||||||||||||||||||| || ||||| |||||||| ||||||    
T  47451379 gtggttatgtacacagagtctctgctttcacttcccggtgacaatgagcaagcttaa 47451323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 11005251 - 11005197
Alignment:
Q  256 tgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagct 310  Q
    ||||||||||||||| |||||  |||||| |||||| ||||||||| ||||||||    
T  11005251 tgggtaatatgtgttcgattgtgtttgtaatatgatccagtatgccacatgagct 11005197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 11023982 - 11023945
Alignment:
Q  56 gctatgtatacagagtctctgctttcactccctggtga 93  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  11023982 gctatgtatacagagtccctgctttcactccccggtga 11023945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 21016403 - 21016476
Alignment:
Q  53 gtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaa 126  Q
    |||||| |||||||||||||| ||||||||||||||| ||| || || || | |||||| || ||| |||||||    
T  21016403 gtggctgtgtatacagagtctttgctttcactccctgatgacaacgaccaagattaagaagatgacacaaacaa 21016476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 30119743 - 30119715
Alignment:
Q  60 tgtatacagagtctctgctttcactccct 88  Q
    |||||||||||||||||||||||||||||    
T  30119743 tgtatacagagtctctgctttcactccct 30119715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University