View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4212_high_1 (Length: 458)
Name: NF4212_high_1
Description: NF4212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4212_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Original strand, 39627907 - 39628334
Alignment:
| Q |
17 |
attatgaaacaaacatcttcgtagaaacttttgctagggatgtattgaacagtatatagttttgaaatgttggcgataatctagcatttgccttgatata |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39627907 |
attatgaaacaaacatcttcctagaaacttttgctagggatgtattgaacagtatatagttttgaaatgttggcgataatctagcatttgccttgatata |
39628006 |
T |
|
| Q |
117 |
atgcttaacaacatgaaaaggcctaaatgtcttcttgactctacattgtcaataaatacaactttatgtaggagtggcgcaaaggtttattttgtgtgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
39628007 |
atgcttaacaacatgaaaaggcctaaatgtcttcttgactctacattgtcaataaatacaactttatgtaggagtggcgcaaaggtttatctt-tgtgtt |
39628105 |
T |
|
| Q |
217 |
tgttttttgcttgcatttctggaaagtattaaactactgaaatacgtgaaatattattatcttatagcattgtgaccatacctggagctaggcttgttga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39628106 |
tgttttttgcttgcatttctggaaagtattaaactactgaaataagtgaaatattattatcttatagcattgcgaccatacctggagctaggcttgttga |
39628205 |
T |
|
| Q |
317 |
tgattttgaaggaatacgtaagtttaatgattacacgtatcaattttgattcttttgaattttggatatgctcgcaaaaacttgagtatcagtcaatttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39628206 |
tgattttgaaggaatacgtaagtttaatgactacacgtatcaattttgattcttttgaattttggatatgctcgcaaaaacttgagtatcagtcaatttt |
39628305 |
T |
|
| Q |
417 |
tagacaaattgtaatatttataagcatct |
445 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39628306 |
tagacaaattgtaatatttataagcatct |
39628334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University