View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4212_high_10 (Length: 228)
Name: NF4212_high_10
Description: NF4212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4212_high_10 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 66115 - 66336
Alignment:
| Q |
7 |
atatttatattgatttgtcgttgtccatgtttcaaatgatttaaatagtgttttaaatgatccaatgagacgtttgttaggttaaaaaggctattatgaa |
106 |
Q |
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| T |
66115 |
atatttatattgatttgtcgttgaccatgtttcaaatgatttaaatagtgttttaaatgatccaatgagatgtttgttaggttaaaaaggctattatgaa |
66214 |
T |
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| Q |
107 |
atcatgagtaggtcatgaaacactgacacaaacatcgaacatgagtagaaatgttaacactggtagtaatttaatcagaatgaattaattgatgggaatc |
206 |
Q |
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| T |
66215 |
atcatgagtaggtcatgaaacactaacacaaacatcgaacatgagtagatatgttgacaccggtagtaatttaatcagaatgaattaattgatgggaatc |
66314 |
T |
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| Q |
207 |
atcttctagataatttgtttga |
228 |
Q |
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| T |
66315 |
atcttctagataatttgtttga |
66336 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 20977996 - 20978126
Alignment:
| Q |
90 |
aaaaaggctattatgaaatcatgagtaggtcatgaaacactgacacaaacatcgaacatgag-------tagaaatgttaacactggtagtaatttaatc |
182 |
Q |
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| T |
20977996 |
aaaaaagctattatgaaatcatgagtaggttatgaaacacaaacacggacatggaatacgatattaatatagatatgttgacaccggtagaaatttaatc |
20978095 |
T |
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| Q |
183 |
agaatgaattaattgatgggaatcatcttct |
213 |
Q |
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| T |
20978096 |
aaaatgaattaattgaagggactcatcttct |
20978126 |
T |
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