View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4212_low_11 (Length: 247)
Name: NF4212_low_11
Description: NF4212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4212_low_11 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 66925 - 66688
Alignment:
| Q |
10 |
atgaaagttttgtaatttaac-tgtttgcatttctaactagtagtgatgtcagcctatacatcccatggggataacttcatcggaagaattcacattaaa |
108 |
Q |
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| T |
66925 |
atgaaagttttgtaatttaacctgtttgcatttctaactagtagtgatgtcagcctatgcatcccatggggataacttcatcggaagaattcacattaaa |
66826 |
T |
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| Q |
109 |
tacgattttataatttgttgtgttatctgtgttgtattttgtataagttatatatattcatattgcaaggaagcatttatccaaaactggatctagctaa |
208 |
Q |
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| T |
66825 |
tacgattt-ataatttgttgtgttatctgtgttgtattttgtataagttatatatattcatattgcaaggaagcatttatccaaaactggatctcgctaa |
66727 |
T |
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| Q |
209 |
caatctcttctcttgccaactttccaccaattcacactc |
247 |
Q |
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| T |
66726 |
caatctcttctcttgccaactttccaccgattcacactc |
66688 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 21005545 - 21005466
Alignment:
| Q |
63 |
ctatacatcccatggggataacttcatcggaagaattcacattaaatacgattttataatttgttgtgttatctgtgttgt |
143 |
Q |
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| T |
21005545 |
ctatacaacgcatggggataacttcattgaaagaattcacgttaagtacga-tgtattatttgttgtgttatctgtgttgt |
21005466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 21005450 - 21005396
Alignment:
| Q |
144 |
attttgtataagttatatatattcatattgcaaggaagcatttatccaaaactggatct |
202 |
Q |
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| T |
21005450 |
attttgtataagttatat----tcgtattgaaaggaagcatttatccaaaaatggatct |
21005396 |
T |
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