View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4212_low_16 (Length: 222)
Name: NF4212_low_16
Description: NF4212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4212_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 4957118 - 4956975
Alignment:
| Q |
1 |
gtaactaagaggacccaaatccttcatagaaaattcaaaggggagtttagttacaacttatgatggattgacgaagggaatataaggacgcaacaagaat |
100 |
Q |
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| T |
4957118 |
gtaactaagaggacccaaatccttcatagaaaattcagagaggagtttagttacaatttatgatggattgacgaagggaatataaggacgcaacaagaat |
4957019 |
T |
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| Q |
101 |
gatatcatccacatagagaaggatatatcattcccttagtggta |
144 |
Q |
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| T |
4957018 |
tatatcatccacatagagaaggatatatcattaccttagtggta |
4956975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25161144 - 25161180
Alignment:
| Q |
1 |
gtaactaagaggacccaaatccttcatagaaaattca |
37 |
Q |
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| T |
25161144 |
gtaactaagaggactcaaatccttcatagaaaattca |
25161180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 25161207 - 25161357
Alignment:
| Q |
73 |
gaagggaatataaggacgcaacaagaatgatatcatccacatagagaagga-------tatatcattcccttagtggtagataaataaggaacgaacgaa |
165 |
Q |
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| T |
25161207 |
gaaggaaatatgaggacgcggctagaatgatatcatccatatagagaaggatataagctatatcattacctcagtggcaaatgaataaggaatgattgga |
25161306 |
T |
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| Q |
166 |
gatgttgtgagagaaacacaaggcagcaatgtagtaagtaaatcactaata |
216 |
Q |
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| T |
25161307 |
gatgttgttagagaaacccaagttagcaacgtagtgggtaagtcactaata |
25161357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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