View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4212_low_5 (Length: 419)
Name: NF4212_low_5
Description: NF4212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4212_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 137 - 387
Target Start/End: Original strand, 32752950 - 32753199
Alignment:
| Q |
137 |
ctacggtgcattaactgggattatagattccattgttgaccaattattgttattttgtttgttttccacattgnnnnnnncaaaggaaattgtttgctgc |
236 |
Q |
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| T |
32752950 |
ctacggtgcattaactgggattatagattccattgttgaccaattattgttattttgtttgttttcctcattgataaaaacaatggaaattgtttgctgc |
32753049 |
T |
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| Q |
237 |
agtcgcttcacatcaggagaatcgcagaagacagatccacttagcagcatataaccagctataaataaaagatgacaaatgaaaagcataatggtgccat |
336 |
Q |
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| T |
32753050 |
agtcgcttcacatcaggagaatcgcagaagacagatccactt---agcatataaccagctataaataaaagatgacaaatgaaaagcataatggtgccat |
32753146 |
T |
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| Q |
337 |
ttgt--gggtctagtagcataatttgaaagctgagctccattaacacaaggca |
387 |
Q |
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| T |
32753147 |
ttgtgggggtttagtagcataatttgaaagctgagctccattaacacaaggca |
32753199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 32752782 - 32752892
Alignment:
| Q |
17 |
agaagaaacattggtcgaacatggcacataaattggatgtgatcaaacataaaagagtgaaagacgtgagcaactaacattatgcatctgattcactctg |
116 |
Q |
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| T |
32752782 |
agaagaaacattggtcgaacatggcacataaattggatgtgatcaaacataaaagagtgaaagacgtgagcaactaacattatgcatctgattcactctg |
32752881 |
T |
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| Q |
117 |
cctcaaattga |
127 |
Q |
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| T |
32752882 |
cctcaaattga |
32752892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 3284614 - 3284504
Alignment:
| Q |
17 |
agaagaaacattggtcgaacatggcacataaattggatgtgatcaaacataaaagagtgaaagacgtgagcaactaacattatgcatctgattcactctg |
116 |
Q |
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|||||||| |||||||| ||||| ||||| |||||| || || ||||| ||||||||||||| | ||||||||||| ||||||| ||||||||||||| |
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| T |
3284614 |
agaagaaaggttggtcgagcatggtacatagattggaggtcttcgaacatgaaagagtgaaagatgcgagcaactaacgttatgcaactgattcactctg |
3284515 |
T |
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| Q |
117 |
cctcaaattga |
127 |
Q |
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| T |
3284514 |
catgaaattga |
3284504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 3282504 - 3282423
Alignment:
| Q |
217 |
caaaggaaattgtttgctgcagtcgcttcacatcaggagaatcgcagaagacagatccacttagcagcatataaccagctataaa |
301 |
Q |
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| T |
3282504 |
caaaggaaattgttcgttgtagtggctttacatcaggagaatcgcggaagacagatccactt---agcatatagccagctataaa |
3282423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 3281965 - 3281928
Alignment:
| Q |
347 |
agtagcataatttgaaagctgagctccattaacacaag |
384 |
Q |
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| T |
3281965 |
agtagcataatttgagagctgagctccactaacacaag |
3281928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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