View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4212_low_9 (Length: 318)
Name: NF4212_low_9
Description: NF4212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4212_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 25606422 - 25606134
Alignment:
| Q |
13 |
agcagagactctggagccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggacctgtt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25606422 |
agcagagactctggagccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggtcctgtt |
25606323 |
T |
|
| Q |
113 |
gctgttgcaattgcttcaactaattcctcttcacagaatacctgaaaatgaagcatgcatgaatcagcacttatattcttgttgtggaagaaatttgagg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25606322 |
gctgttgcaattgcttcaactaattcctcttcacagaatacctgaaaatgaagcatgcatgaatcagcacttatattcttgttatggaagaaatttgagg |
25606223 |
T |
|
| Q |
213 |
agaatgcatcaagatgtcaaacgactcaccttggtagtccaacattttccttcaccattgtgaattgcatcaatcaatccagtgtaatt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25606222 |
agaatgcatcaagatgtcaaacgactcaccttggtagtccaacattttccttcaccattgtgaattgcatcaatcaatccagtgtaatt |
25606134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 25626063 - 25625775
Alignment:
| Q |
13 |
agcagagactctggagccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggacctgtt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25626063 |
agcagagactctggagccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggtcctgtt |
25625964 |
T |
|
| Q |
113 |
gctgttgcaattgcttcaactaattcctcttcacagaatacctgaaaatgaagcatgcatgaatcagcacttatattcttgttgtggaagaaatttgagg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
25625963 |
gctgttgcaattgcttcaactaattcctcttcacagaatacctgaaaatgaagcatgcatgaatcagcacttatattcttgttatggaagaaatttgatg |
25625864 |
T |
|
| Q |
213 |
agaatgcatcaagatgtcaaacgactcaccttggtagtccaacattttccttcaccattgtgaattgcatcaatcaatccagtgtaatt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25625863 |
agaatgcatcaagatgtcaaacgactcaccttggtagtccaacattttccttcaccattgtgaattgcatcaatcaatccagtgtaatt |
25625775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 5332886 - 5332768
Alignment:
| Q |
29 |
ccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggacctgttgctgttgcaattgctt |
128 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| | ||| |||||||| |||||||||||| ||||||||| |
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| T |
5332886 |
ccccattcaagcaactctttgctagtgtcatccttgtgaacaatcacctcaatgaagcataaacaatccttctttggtcctgttgctgtttcaattgctt |
5332787 |
T |
|
| Q |
129 |
caactaattcctcttcaca |
147 |
Q |
| |
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|||| | ||||||||||| |
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| T |
5332786 |
caacaagctcctcttcaca |
5332768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 20436739 - 20436621
Alignment:
| Q |
29 |
ccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggacctgttgctgttgcaattgctt |
128 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| || ||| |||| ||||||||||| ||||||||| |
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| T |
20436739 |
ccccactcaagcaactctttgctagtgtcatccttgtgaacaatcacctcaataaagcataagcaattcttcattggtcctgttgctgtctcaattgctt |
20436640 |
T |
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| Q |
129 |
caactaattcctcttcaca |
147 |
Q |
| |
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|||| | ||||||||||| |
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| T |
20436639 |
caacaagctcctcttcaca |
20436621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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