View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4213_high_1 (Length: 822)

Name: NF4213_high_1
Description: NF4213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4213_high_1
NF4213_high_1
[»] chr7 (2 HSPs)
chr7 (671-808)||(3270423-3270562)
chr7 (527-568)||(10054159-10054200)
[»] chr5 (2 HSPs)
chr5 (488-588)||(24131458-24131558)
chr5 (489-570)||(7742091-7742171)
[»] chr4 (2 HSPs)
chr4 (181-266)||(39998628-39998715)
chr4 (510-570)||(25367065-25367125)
[»] chr6 (3 HSPs)
chr6 (53-112)||(8849986-8850045)
chr6 (516-580)||(9395809-9395873)
chr6 (511-569)||(16440190-16440248)
[»] chr3 (2 HSPs)
chr3 (122-196)||(23510496-23510570)
chr3 (517-570)||(21828436-21828489)
[»] chr1 (3 HSPs)
chr1 (122-185)||(30745710-30745773)
chr1 (122-185)||(30767161-30767224)
chr1 (601-675)||(22666630-22666704)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 671 - 808
Target Start/End: Original strand, 3270423 - 3270562
Alignment:
Q  671 tataattggttttcttgttattagaggaaacaatatt--ttgttttaaatatatgacggactgacccgtttagcctacaacccgtatagggtcgggctca 768  Q
    |||||||||||||||||||| ||||||||| ||| ||  || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3270423 tataattggttttcttgttactagaggaaataattttattttttttaaatatatgacggactgatccgtttagcctacaacccgtatagggtcgggctca 3270522  T
Q  769 tgtagtatttttagagcccattttaaaacaaggcttttaa 808  Q
     |||||||||||||||||| ||||||||||||||||||||    
T  3270523 ggtagtatttttagagcccgttttaaaacaaggcttttaa 3270562  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 10054159 - 10054200
Alignment:
Q  527 attcaattaaaagaagttaatttcgaaaataatcaatttact 568  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  10054159 attcaattaaaagaaattaatttagaaaataagcaatttact 10054200  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 488 - 588
Target Start/End: Complemental strand, 24131558 - 24131458
Alignment:
Q  488 ccccttaagatcagtcaaaactctaacaatcatacgtagattcaattaaaagaagttaatttcgaaaataatcaatttactacagtcatgttcagacgaa 587  Q
    ||||||||||| ||||||||  |||| || ||||| |||||||||||||||||  ||||||| |||||||| ||||||||||  ||| ||||| ||||||    
T  24131558 ccccttaagatgagtcaaaatcctaaaaagcatacttagattcaattaaaagagattaattttgaaaataaacaatttactaatgtcttgttcggacgaa 24131459  T
Q  588 g 588  Q
    |    
T  24131458 g 24131458  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 489 - 570
Target Start/End: Original strand, 7742091 - 7742171
Alignment:
Q  489 cccttaagatcagtcaaaactctaacaatcatacgtagattcaattaaaagaagttaatttcgaaaataatcaatttactac 570  Q
    |||||||||| ||||||||| |||| |||||||| |||||||||| |||| || ||||||| |||| ||| |||||||||||    
T  7742091 cccttaagatgagtcaaaaccctaa-aatcatacttagattcaatgaaaataatttaatttagaaattaagcaatttactac 7742171  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 39998628 - 39998715
Alignment:
Q  181 ttcaatcaaacatagttgtatca--gagcttatacaatccaacaaagtgaatctttcatagtgagaaagttacaaagatcaagaagat 266  Q
    ||||||| |||||||| || |||  |||||||||| |||||| |||| ||||||||||| ||||||||||| || |||||||||||||    
T  39998628 ttcaatccaacatagtggtgtcatagagcttatacgatccaagaaagcgaatctttcattgtgagaaagtttcagagatcaagaagat 39998715  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 510 - 570
Target Start/End: Complemental strand, 25367125 - 25367065
Alignment:
Q  510 ctaacaatcatacgtagattcaattaaaagaagttaatttcgaaaataatcaatttactac 570  Q
    |||||||||||||  | ||||||||||||||| ||||||| ||||||||  ||||||||||    
T  25367125 ctaacaatcatactcatattcaattaaaagaaattaatttagaaaataagtaatttactac 25367065  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 8850045 - 8849986
Alignment:
Q  53 tagcacaagtttgtcagaagttagttactagctggacgttagttggttaagattgagtta 112  Q
    |||||||||||||| ||||||||||||||||||  | ||||||||| |||||||||||||    
T  8850045 tagcacaagtttgttagaagttagttactagctaaaagttagttggataagattgagtta 8849986  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 580
Target Start/End: Original strand, 9395809 - 9395873
Alignment:
Q  516 atcatacgtagattcaattaaaagaagttaatttcgaaaataatcaatttactacagtcatgttc 580  Q
    ||||||| |||||||||||||||||  ||| ||| |||||||||||| ||||||| ||| |||||    
T  9395809 atcatacttagattcaattaaaagagattattttagaaaataatcaaattactactgtcttgttc 9395873  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 569
Target Start/End: Complemental strand, 16440248 - 16440190
Alignment:
Q  511 taacaatcatacgtagattcaattaaaagaagttaatttcgaaaataatcaatttacta 569  Q
    ||||||| |||| |||| ||||||||||||| ||||||  |||||||| ||||||||||    
T  16440248 taacaatgatacttagaatcaattaaaagaaattaattaagaaaataagcaatttacta 16440190  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 23510496 - 23510570
Alignment:
Q  122 attcatactctctcattcttcttcttagttgcaattcacctcacatcaatgagtagtttttcaatcaaacatagt 196  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||| |  | |||| ||||||||| ||||||||    
T  23510496 attcatactctctcattctccttcgaagttgcaattcacctcacattagagtgtagcttttcaatccaacatagt 23510570  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 570
Target Start/End: Original strand, 21828436 - 21828489
Alignment:
Q  517 tcatacgtagattcaattaaaagaagttaatttcgaaaataatcaatttactac 570  Q
    |||||| |||||||||| ||||||| || |||| |||||||| |||||||||||    
T  21828436 tcatacttagattcaatgaaaagaattttattttgaaaataagcaatttactac 21828489  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 30745710 - 30745773
Alignment:
Q  122 attcatactctctcattcttcttcttagttgcaattcacctcacatcaatgagtagtttttcaa 185  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||| | || |||||| |||||    
T  30745710 attcatactctctcatttttcttcgaagttgcaattcacctcacattagtgtgtagttcttcaa 30745773  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 30767161 - 30767224
Alignment:
Q  122 attcatactctctcattcttcttcttagttgcaattcacctcacatcaatgagtagtttttcaa 185  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||| | || |||||| |||||    
T  30767161 attcatactctctcatttttcttcgaagttgcaattcacctcacattagtgtgtagttcttcaa 30767224  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 675
Target Start/End: Complemental strand, 22666704 - 22666630
Alignment:
Q  601 aattgaatatgctaatattt-tttcgagtgtgcaagaatcatagaatatggctatcaatgatttgaacatgtataa 675  Q
    |||||||||||||||||||| |||| |||||||||| |||||||||||   |||||| ||  ||||||||||||||    
T  22666704 aattgaatatgctaatatttatttcaagtgtgcaag-atcatagaataaatctatcagtggcttgaacatgtataa 22666630  T

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