View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4213_high_5 (Length: 237)
Name: NF4213_high_5
Description: NF4213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4213_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11730270 - 11730050
Alignment:
| Q |
1 |
gctaaattaatcaattaagattatttagtgactagccgaatgacagtacatcacattaacttattaattcttacagtcaccatttcataagatgaccatt |
100 |
Q |
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| T |
11730270 |
gctaaattaatcaattaagattatttagtgactagccgaatgacagtacatcacattaacatattaattcttacagtcaccatttcataagatgaccatt |
11730171 |
T |
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| Q |
101 |
tcannnnnnngttaggacggcatatttgtgcttgtgggaacgcagtcttaattaatgcaatgccaagtacaaattcaatataattaaataggctttaata |
200 |
Q |
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| T |
11730170 |
tcatttttttgttaggacggcatatttgtgcttgtgggaacgcagccttaattaatgcaatgccaagtacaaattcaatataattaaataggctttaata |
11730071 |
T |
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| Q |
201 |
cgacgccaatattcatccaac |
221 |
Q |
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| T |
11730070 |
cgacgccaatattcatccaac |
11730050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 11687171 - 11687307
Alignment:
| Q |
1 |
gctaaattaatcaattaagattatttagtgactagccgaatgacagtacatcacattaacttat-----taattcttacagtcaccatttcataagatga |
95 |
Q |
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| T |
11687171 |
gctaaattaatcaattaagattatttagtgactagccgaatgacagtacatcacattaacttattactgtaattcttacagtcaccatttcataagatga |
11687270 |
T |
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| Q |
96 |
ccatttcannnnnnngttaggacggcatatttgtgct |
132 |
Q |
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| T |
11687271 |
ccatttcatttttttgttaggacggcatatttgtgct |
11687307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 11689903 - 11690004
Alignment:
| Q |
2 |
ctaaattaatcaattaagattatttagt----gactagccgaatgacagtacatcacattaacttattaattcttacagtcaccatttcataagatgacc |
97 |
Q |
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| T |
11689903 |
ctaaattaaacaattaagattatttagtgaaggactagccggatggcagcacataactttagcttattgattctta---ttaccatttcacaagatgacc |
11689999 |
T |
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| Q |
98 |
atttc |
102 |
Q |
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||||| |
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| T |
11690000 |
atttc |
11690004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 11721155 - 11721126
Alignment:
| Q |
2 |
ctaaattaatcaattaagattatttagtga |
31 |
Q |
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| T |
11721155 |
ctaaattaatcaattaagattatttagtga |
11721126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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