View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4213_high_6 (Length: 232)
Name: NF4213_high_6
Description: NF4213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4213_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 35406965 - 35407163
Alignment:
| Q |
16 |
atgaaaatggagagagatgagaatgttgatagtgataatattactaagactaatgtggaggtgggaaaaggaaaagaaggggtaagaaacaacgcatggc |
115 |
Q |
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| T |
35406965 |
atgaaaatggagagagatgagaatgttgatagtgataatattactaagactaatgtggaagtgggaaaaggaaaagagggggtaagaaacaacgcatggc |
35407064 |
T |
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| Q |
116 |
aaatgtggcatcgaaatgggacaaggtgtccaaagggaacggttcctatgcggaggagtacagtaaatgatgtgttgagagcaaaatcttggtatgatt |
214 |
Q |
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| T |
35407065 |
aaatgtggcatcgaaatgggacaaggtgtccaaagggaacggttcctatgcggaggagtacagtacatgatgtgttgagagcaaaatctttgtatgatt |
35407163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 48019393 - 48019290
Alignment:
| Q |
109 |
gcatggcaaatgtggcatcgaaatgggacaaggtgtccaaagggaacggttcctatgcggaggagtacagtaaatgatgtgttgagagcaaaatcttggt |
208 |
Q |
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||||||||||||||||| | |||||||||| | |||||||| ||||| || || || ||| |||| || || |||||||||||||||| ||||||| || |
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| T |
48019393 |
gcatggcaaatgtggcaccaaaatgggacacgttgtccaaaaggaactgtaccgatacggcggagcacggtgcatgatgtgttgagagctaaatctttgt |
48019294 |
T |
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| Q |
209 |
atga |
212 |
Q |
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| T |
48019293 |
atga |
48019290 |
T |
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