View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4213_low_2 (Length: 569)
Name: NF4213_low_2
Description: NF4213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4213_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 552
Target Start/End: Original strand, 27024792 - 27025332
Alignment:
| Q |
11 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27024792 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
27024891 |
T |
|
| Q |
111 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27024892 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttctt |
27024991 |
T |
|
| Q |
211 |
gctgatattggatttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttccccatt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
27024992 |
gctgatattggatttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagaagcaagagattgtttgaaaatatatcttccccgtt |
27025091 |
T |
|
| Q |
311 |
tctattaaatcccattgcaatctatgttccctttactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtcttttatg |
410 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27025092 |
tctactaaatcccattgcaatctatgttccctttactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtcttttatg |
27025191 |
T |
|
| Q |
411 |
ctttcagttttaattttggattgttggagataaacattattgaaaaattctaatgaaaatggttggatttaattatgtgttgcatttttatgttccannn |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
27025192 |
ctttcagttttaattttggattgttggagataaacattattgaaaaattctaatgaaaatggttgaatttaattatgtgttgcatttttatgttcca-tt |
27025290 |
T |
|
| Q |
511 |
nnnnnnngggttagaagcatataagtgctcatgttccatatg |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
27025291 |
tttttttgggttagaagcatataagtgctcatgttccatatg |
27025332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 552
Target Start/End: Original strand, 33020565 - 33021105
Alignment:
| Q |
11 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
33020565 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagaggggtccaaactgca |
33020664 |
T |
|
| Q |
111 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33020665 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttctt |
33020764 |
T |
|
| Q |
211 |
gctgatattggatttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttccccatt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
33020765 |
gctgatattggatttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagaagcaagagattgtttgaaaatatatcttccccgtt |
33020864 |
T |
|
| Q |
311 |
tctattaaatcccattgcaatctatgttccctttactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtcttttatg |
410 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33020865 |
tctactaaatcccattgcaatctatgttccctttactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtcttttatg |
33020964 |
T |
|
| Q |
411 |
ctttcagttttaattttggattgttggagataaacattattgaaaaattctaatgaaaatggttggatttaattatgtgttgcatttttatgttccannn |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33020965 |
ctttcagttttaattttggattgttggagataaacattattgaaaaattctaatgaaaatggttggatttaattatgtgttgcatttttatgttcca-tt |
33021063 |
T |
|
| Q |
511 |
nnnnnnngggttagaagcatataagtgctcatgttccatatg |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
33021064 |
tttttttgggttagaagcatataagtgctcatgttccatatg |
33021105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 19256545 - 19256883
Alignment:
| Q |
11 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
19256545 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagtggggtccaaactgca |
19256644 |
T |
|
| Q |
111 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19256645 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttctt |
19256744 |
T |
|
| Q |
211 |
gctgatattggatttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttccccatt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
19256745 |
gctgatattggatttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttccccgtt |
19256844 |
T |
|
| Q |
311 |
tctattaaatcccattgcaatctatgttccctttactac |
349 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||| |
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|
| T |
19256845 |
tctactaaattccactgcaatctatgttccctttactac |
19256883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 10118370 - 10118074
Alignment:
| Q |
11 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10118370 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
10118271 |
T |
|
| Q |
111 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10118270 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttctt |
10118171 |
T |
|
| Q |
211 |
gctgatattggatttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttcccc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10118170 |
gctgatattggatttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttcccc |
10118074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 309 - 552
Target Start/End: Complemental strand, 10114917 - 10114673
Alignment:
| Q |
309 |
tttctattaaatcccattgcaatctatgttccctttactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtctttta |
408 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10114917 |
tttctactaaatcccattgcaatctatgttccctttactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtctttta |
10114818 |
T |
|
| Q |
409 |
tgctttcagttttaattttggattgttggagataaacattattgaaaaattctaatgaaaatggttggatttaattatgtgttgcatttttatgttcca- |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10114817 |
tgctttcagttttaattttggattgttggagataaacattattgaaaaattctaatgaaaatggttgaatttaattatgtgttgcatttttatgttccat |
10114718 |
T |
|
| Q |
508 |
nnnnnnnnnngggttagaagcatataagtgctcatgttccatatg |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10114717 |
ttttttttttgggttagaagcatataagtgctcatgttccatatg |
10114673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 4890947 - 4890870
Alignment:
| Q |
16 |
agagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacaca |
93 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||| || ||||||| |
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|
| T |
4890947 |
agaggaaaattgttggagatgatagttgaggatttactggaaggggaagttgattatgagtttgatattgtagacaca |
4890870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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