View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4213_low_3 (Length: 527)
Name: NF4213_low_3
Description: NF4213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4213_low_3 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 295058 - 294537
Alignment:
| Q |
1 |
actacttcagtttcaagaattatcagacatgcagagatgggagtttcttctttttggtggactcatatggatatacttaactgcaagaccaggtgttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
295058 |
actacttcagtttcaagaattatcagacatgcagagatgggagtttcttctttttggtggactcatatggatatacttaactgcaagaccaggtgttctt |
294959 |
T |
|
| Q |
101 |
attggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaatttgaagactggtgattttcttgttggag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
294958 |
attggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaacttgaagactggtgattttcttgttggag |
294859 |
T |
|
| Q |
201 |
ataaaatcggtgaagggtcatttggtgttgtttattctggtgttttgatctcaaagaatgtggtggatgttgaggaggaaaagagaggaagatccaaggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
294858 |
ataaaatcggtgaagggtcatttggtgttgtttattctggtgttttgatctcaaagaatgtggtggatgttgaggaggacaagagaggaagatccaaggc |
294759 |
T |
|
| Q |
301 |
aacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaacccctttcttgttgtctaaataaaattgaattttagtata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
294758 |
aacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaaccccttacttgttgtctaaataaaattgaattttagtata |
294659 |
T |
|
| Q |
401 |
aggtaggattctgcaatgtgaatgctcagagcaaccaaaacaggctatagcacagaccgacacctcggattgaagatgtgtccgcggcttggcatgacac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
294658 |
aggtaggattctgcaatgtgaatgctcagagcaaccaaaataggctatagcacagactgacacctcggattgaagatgtgtccgcggcttggcatgacac |
294559 |
T |
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| Q |
501 |
atgtgattacattcaattattt |
522 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
294558 |
atgtgattacattcaattattt |
294537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 526
Target Start/End: Original strand, 7438619 - 7438648
Alignment:
| Q |
497 |
acacatgtgattacattcaattatttcatt |
526 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7438619 |
acacatgtgattacattcaattatttcatt |
7438648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 495 - 527
Target Start/End: Complemental strand, 32691796 - 32691764
Alignment:
| Q |
495 |
tgacacatgtgattacattcaattatttcattt |
527 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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| T |
32691796 |
tgacacatgtgattacattcaattatgtcattt |
32691764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 78 - 247
Target Start/End: Original strand, 27490712 - 27490881
Alignment:
| Q |
78 |
taactgcaagaccaggtgttcttattggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaatttgaa |
177 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| | ||| ||| ||| || | | |||||||||||||||||||||| |
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| T |
27490712 |
taactgcaagaccaggtgttcttattggtgctattgatgcataccttttggctccaatgcaatttgttttggatagtttatctggaaggagaaatttgaa |
27490811 |
T |
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| Q |
178 |
gactggtgattttcttg-ttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgttttg |
247 |
Q |
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|| |||| ||||||| |||| | ||| || || |||||||||||||||||||||||||||| ||||||| |
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| T |
27490812 |
gaggagtga-tttcttgattggtggtaagataggagaagggtcatttggtgttgtttattctgctgttttg |
27490881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 527
Target Start/End: Original strand, 51383994 - 51384026
Alignment:
| Q |
495 |
tgacacatgtgattacattcaattatttcattt |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
51383994 |
tgacacatgtgattacattcaattatttcattt |
51384026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 527
Target Start/End: Original strand, 26462652 - 26462683
Alignment:
| Q |
496 |
gacacatgtgattacattcaattatttcattt |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
26462652 |
gacacatgtgattacattcaattatttcattt |
26462683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 527
Target Start/End: Complemental strand, 22305599 - 22305569
Alignment:
| Q |
497 |
acacatgtgattacattcaattatttcattt |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
22305599 |
acacatgtgattacattcaattatttcattt |
22305569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 527
Target Start/End: Original strand, 4991151 - 4991184
Alignment:
| Q |
494 |
atgacacatgtgattacattcaattatttcattt |
527 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
4991151 |
atgacacatgtgattacattcaattaattcattt |
4991184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 495 - 527
Target Start/End: Complemental strand, 28525061 - 28525029
Alignment:
| Q |
495 |
tgacacatgtgattacattcaattatttcattt |
527 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
28525061 |
tgacacatgtgattacattcaattaattcattt |
28525029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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