View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4213_low_4 (Length: 489)
Name: NF4213_low_4
Description: NF4213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4213_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 1792835 - 1792370
Alignment:
| Q |
18 |
gaatccctattaaagggcagtatatggtaggtaacattctgagtaaatagcaaagaaagaatgtctcattcacacacaagcttaggtatgcgtgcatttg |
117 |
Q |
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| T |
1792835 |
gaatccctattaaagcgcagtatatggtaggtaacattctgagtaaatagcaaagaaagaatgtctcattcacacacaagcttaggtatgcgtgcatttg |
1792736 |
T |
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| Q |
118 |
aagaataagaatgtgggttttcatggagaatagagaatcaagggggtgaagcacaaggagttatttgtgttttgcacattctttgagccaagggttttgt |
217 |
Q |
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| T |
1792735 |
aagaataagaatgtgggttttcatggagaatagagaatcaagggggtgaagcacaaggagttatttgtgttttgcacattctttgaaccaagggttttgt |
1792636 |
T |
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| Q |
218 |
cattgccacgtttacccatgttttcctctaaatttgacaacgattaagaaagtcccaagaataaaagac-nnnnnnngtgtgattcaatgatatctttat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1792635 |
cattgccacgtttacccatgttttcctctaaatttgacaacgattaagaaagtcccaagaataaaagacaaaaaaaagtgtgattcaatgatatctttat |
1792536 |
T |
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| Q |
317 |
cattttcgtacttaagtgttatgcaaatttgtataagcttccatgccttttttgcaaagtttcatgccttatgggaattgtgagtttttgcataaattat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792535 |
cattttcgtacttaagtgttatgcaaatttgtataagcttccatgccttttttgcaaagtttcatgccttatgggaattgtgagtttttgcataaattat |
1792436 |
T |
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| Q |
417 |
gcaaccnnnnnnngtgttttatttcaggtcaatttggggaagtgcttttcaatattcttcgacatc |
482 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
1792435 |
gcaacctttttttgtgttttatttcaggtcaatttagggaagtgcttttcaatattcttcaacatc |
1792370 |
T |
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