View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4213_low_5 (Length: 442)

Name: NF4213_low_5
Description: NF4213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4213_low_5
NF4213_low_5
[»] chr3 (4 HSPs)
chr3 (20-433)||(6789813-6790226)
chr3 (20-67)||(1140194-1140241)
chr3 (20-67)||(17402773-17402820)
chr3 (256-423)||(31135116-31135283)
[»] chr4 (8 HSPs)
chr4 (20-425)||(23566003-23566407)
chr4 (20-106)||(52518953-52519039)
chr4 (65-157)||(18395544-18395636)
chr4 (49-156)||(18320122-18320229)
chr4 (49-156)||(18398454-18398561)
chr4 (20-69)||(23564664-23564713)
chr4 (20-67)||(7040554-7040601)
chr4 (20-67)||(18656301-18656348)
[»] scaffold0251 (2 HSPs)
scaffold0251 (177-403)||(4901-5127)
scaffold0251 (70-140)||(4720-4790)
[»] chr7 (8 HSPs)
chr7 (49-423)||(21632606-21632969)
chr7 (20-106)||(28126366-28126452)
chr7 (206-308)||(6686978-6687080)
chr7 (22-67)||(20046486-20046531)
chr7 (23-67)||(44963359-44963403)
chr7 (283-332)||(9879503-9879552)
chr7 (20-60)||(4895777-4895817)
chr7 (20-60)||(28124585-28124625)
[»] chr6 (12 HSPs)
chr6 (207-408)||(24546227-24546428)
chr6 (20-106)||(5377071-5377157)
chr6 (178-302)||(15866935-15867059)
chr6 (178-302)||(33867787-33867911)
chr6 (49-123)||(24544841-24544915)
chr6 (49-140)||(33866322-33866413)
chr6 (49-143)||(14619145-14619239)
chr6 (49-115)||(15866803-15866869)
chr6 (20-68)||(1088643-1088691)
chr6 (20-67)||(5378926-5378973)
chr6 (206-284)||(14619311-14619389)
chr6 (24-60)||(19645298-19645334)
[»] chr5 (5 HSPs)
chr5 (163-315)||(33688440-33688592)
chr5 (42-123)||(25076050-25076131)
chr5 (42-123)||(25134019-25134100)
chr5 (268-403)||(25075761-25075896)
chr5 (268-403)||(25133730-25133865)
[»] chr1 (5 HSPs)
chr1 (49-302)||(9310635-9310897)
chr1 (49-302)||(3283024-3283292)
chr1 (20-106)||(17449503-17449589)
chr1 (206-304)||(5926042-5926140)
chr1 (20-60)||(16808576-16808616)
[»] chr8 (5 HSPs)
chr8 (20-68)||(30224423-30224471)
chr8 (23-67)||(6428937-6428981)
chr8 (20-66)||(5567619-5567665)
chr8 (23-68)||(3375424-3375469)
chr8 (20-67)||(25249199-25249246)
[»] chr2 (2 HSPs)
chr2 (20-68)||(29758313-29758361)
chr2 (66-123)||(18739909-18739966)
[»] scaffold0189 (1 HSPs)
scaffold0189 (20-62)||(19138-19180)


Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 20 - 433
Target Start/End: Original strand, 6789813 - 6790226
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  6789813 ttgcttacatctatgacttctctccctatgattccatgattcttaacatggtatcagagcgataccctagggaggaagatgatgatgcttctgctttcga 6789912  T
Q  120 ttcagacatcgatgaagatgaagaatctgatgatgcagcttctgcttctgcgattccggaaacttcatcttctcacgatcgcatccttttcggcagtttc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6789913 ttcagacatcgatgaagatgaagaatctgatgatgcagcttctgcttctgcgattccggaaacttcatcttctcacgatcgcatcgttttcggcagtttc 6790012  T
Q  220 gagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattctccatcaagattggggagatttcatgtgctcttgttactcctt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6790013 gagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattctcgatcaagattggggagatttcatgtgctcttgttactcctt 6790112  T
Q  320 gctgcaacatcgtcaatgaaaacaattatgtgtttgttgattcgcaagaagatgagaaattggaaattcttgaacctgaattgacgaattgcgaatctga 419  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6790113 gctgcaacatggtcaatgaaaacaattatgtgtttgttgattcgcaagaagatgagaaattggaaattcttgaacctgaattgacgaattgcgactctga 6790212  T
Q  420 tttcttcatctctg 433  Q
    ||||||||| ||||    
T  6790213 tttcttcatttctg 6790226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 1140194 - 1140241
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaaca 67  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1140194 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 1140241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 17402820 - 17402773
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaaca 67  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17402820 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 17402773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 423
Target Start/End: Complemental strand, 31135283 - 31135116
Alignment:
Q  256 gaaccagaatttgatggattctccatcaagattggggagatttcatgtgctcttgttactccttgctgcaacatcgtcaatgaaaacaattatgtgtttg 355  Q
    |||||| |||||||||||||||||||||||| | ||||||| || |||| ||| |||||| |||   ||||||||||| || |  || ||| ||||||||    
T  31135283 gaaccataatttgatggattctccatcaagactagggagatatcttgtgttctcgttactgcttctagcaacatcgtcgattacgacgattttgtgtttg 31135184  T
Q  356 ttgattcgcaagaagatgagaaattggaaattcttgaacctgaattgacgaattgcgaatctgatttc 423  Q
    ||| |   ||||| |||||||||  | |  ||||||||  |||||||| |||  |||| |||||||||    
T  31135183 ttgttctacaagatgatgagaaacagaaggttcttgaatatgaattgaagaaccgcgactctgatttc 31135116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 23566407 - 23566003
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcga 119  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  23566407 ttgcttacatctatgacttttctcc-tatgattccatgattcttaatgtggtatcagagcgataccctagggaggaagttgatgatgcttccgctttcga 23566309  T
Q  120 ttcagacatcgatgaagatgaagaatctgatgatgcagcttctgcttctgcgattccggaaacttcatcttctcacgatcgcatccttttcggcagtttc 219  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  23566308 ttcagacaccgatgaagatgaagaatctgatgatgcagcttctgcttctgcgattccggaaacttcatcttctcaagatcgcatcttttttggcagtttc 23566209  T
Q  220 gagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattctccatcaagattggggagatttcatgtgctcttgttactcctt 319  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  23566208 gagtctccaattactccagtttcaactcatgtaatcgcaccagaatttgatggattctccatcaagattggggagatttcatgtgttcttgttgctcctt 23566109  T
Q  320 gctgcaacatcgtcaatgaaaacaattatgtgtttgttgattcgcaagaagatgagaaattggaaattcttgaacctgaattgacgaattgcgaatctga 419  Q
    || |||||||||| |||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23566108 gcagcaacatcgtaaatgaagacaattctgtgtttgttaatttgcaagaagatgagaaattggaaattcttgaacctgaattgacgaattgcgactctga 23566009  T
Q  420 tttctt 425  Q
    ||||||    
T  23566008 tttctt 23566003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 52518953 - 52519039
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatg 106  Q
    ||||||||||||||||  | ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||||    
T  52518953 ttgcttacatctatgatctttctccctatgattccatgattttcaacatggtatcagagcgataccctagggaggaagatgaagatg 52519039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 18395636 - 18395544
Alignment:
Q  65 acatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattcagacatcgatgaagatgaagaatctgatgatgcag 157  Q
    ||||| |||||||| ||||||||||||| ||| ||||||||||||| ||||| |||||| | || ||||||||||||||||||||||||||||    
T  18395636 acatgatatcagagcgataccctagggatgaatatgatgatgcttctgctttagattcaaaaattgatgaagatgaagaatctgatgatgcag 18395544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 18320122 - 18320229
Alignment:
Q  49 gattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattcagacatcgatgaagatgaagaatctg 148  Q
    ||||||||||||  ||| ||||||||| || ||||||||||||| ||||||||||||||||||||||  |||||  | || ||||||||||||||||||     
T  18320122 gattccatgattactaatatggtatcatagagataccctagggatgaagatgatgatgcttccgcttcagattctaaaattgatgaagatgaagaatcta 18320221  T
Q  149 atgatgca 156  Q
    ||||||||    
T  18320222 atgatgca 18320229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 18398561 - 18398454
Alignment:
Q  49 gattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattcagacatcgatgaagatgaagaatctg 148  Q
    ||||||||||||  ||| ||||||||| || ||||||||||||| ||||||||||||||||||||||  |||||  | || ||||||||||||||||||     
T  18398561 gattccatgattactaatatggtatcatagagataccctagggatgaagatgatgatgcttccgcttcagattctaaaattgatgaagatgaagaatcta 18398462  T
Q  149 atgatgca 156  Q
    ||||||||    
T  18398461 atgatgca 18398454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 23564713 - 23564664
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaacatg 69  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23564713 ttgcttacatctatgacttttctccctatgattccatgattcttaacatg 23564664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 7040554 - 7040601
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaaca 67  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7040554 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 7040601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 18656301 - 18656348
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaaca 67  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18656301 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 18656348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 177 - 403
Target Start/End: Original strand, 4901 - 5127
Alignment:
Q  177 ggaaacttcatcttctcacgatcgcatccttttcggcagtttcgagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattc 276  Q
    ||||| |||| ||||||||||||  ||||||||||||| |||||| ||||| || | ||||||||||| |||| | ||||||||| |||| |||||||||    
T  4901 ggaaaattcaacttctcacgatcctatccttttcggcattttcgattctccgatcattccggtttcaaatcctttgatcgaaccaaaattcgatggattc 5000  T
Q  277 tccatcaagattggggagatttcatgtgctcttgttactccttgctgcaacatcgtcaatgaaaacaattatgtgtttgttgattcgcaagaagatgaga 376  Q
    |||||||| ||||| |||||||| || ||  |  | | ||||||||||||||||||||| ||| || ||| | |||| ||||||||||||||||||||||    
T  5001 tccatcaaaattggtgagatttcttgcgcaatcatcaatccttgctgcaacatcgtcaaagaagacgattgtatgttcgttgattcgcaagaagatgaga 5100  T
Q  377 aattggaaattcttgaacctgaattga 403  Q
    |||||||  ||||||||||||||||||    
T  5101 aattggaggttcttgaacctgaattga 5127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 4720 - 4790
Alignment:
Q  70 gtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattcagacatcgatgaagatga 140  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||   |||||||||||||    
T  4720 gtatcagagcgataccctagggatgaagatgatgatgcttccgcttccgattcagcactcgatgaagatga 4790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 49 - 423
Target Start/End: Complemental strand, 21632969 - 21632606
Alignment:
Q  49 gattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattcagacatcgatgaagatgaagaatctg 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |             | ||||||||||||| ||    
T  21632969 gattccatgattcataacatggtatcagagtgataccctagggatgaagttgatgatgcttccgcttcc-------------acgaagatgaagaatttg 21632883  T
Q  149 atgatgcagcttctgc---ttctgcgattccggaaacttcatcttctcacgatcgcatccttttcggcagtttcgagtctccaattactccggtttcaac 245  Q
    ||||||| | ||  ||   ||||||  ||  ||| |||||| ||||||| ||| || |||||||||||||||| || |||||||| |  |||||||| |     
T  21632882 atgatgcggttttcgcaacttctgcattttaggatacttcaacttctcaagattgcgtccttttcggcagttttgattctccaatcataccggtttctaa 21632783  T
Q  246 tcctgtaatcgaaccagaatttgatggattctccatcaagattggggagatttcatgtgctcttgttactccttgctgcaacatcgtcaatgaaaacaat 345  Q
     | |  |||| ||||| ||||||||||||| || ||||||||||| |||||||| || |   | ||   ||||||||||||||||||||| ||| || ||    
T  21632782 cctttcaatcaaaccaaaatttgatggattttc-atcaagattggtgagatttcttgcgtaatcgtcgatccttgctgcaacatcgtcaaagaagacgat 21632684  T
Q  346 tatgtgtttgttgattcgcaagaagatgagaaattggaaattcttgaacctgaattgacgaattgcgaatctgatttc 423  Q
    | ||||||  |||| |||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||    
T  21632683 tgtgtgttcattgaatcgcaagaagatgagaaattggaagttcttgaacctgaattgaagaatcgcgactctgatttc 21632606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 28126452 - 28126366
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatg 106  Q
    ||||||||||||||||  | ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||||    
T  28126452 ttgcttacatctatgatctttctccctatgattccatgattttcaacatggtatcagagcgataccctagggaggaagatgaagatg 28126366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 308
Target Start/End: Complemental strand, 6687080 - 6686978
Alignment:
Q  206 ttttcggcagtttcgagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattctccatcaagattggggagatttcatgtgc 305  Q
    ||||||| |||||||| ||| |||| |  | |||||||| ||||   |||||||||||||||||||||||||||||||||||||| |||||||| | |||    
T  6687080 ttttcggtagtttcgaatcttcaatcaaactggtttcaaatccttccatcgaaccagaatttgatggattctccatcaagattggtgagatttcttatgc 6686981  T
Q  306 tct 308  Q
    |||    
T  6686980 tct 6686978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 20046531 - 20046486
Alignment:
Q  22 gcttacatctatgacttctctccctatgattccatgattcttaaca 67  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  20046531 gcttacatctatgacttttctccctatgattccatgattcttaaca 20046486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 44963359 - 44963403
Alignment:
Q  23 cttacatctatgacttctctccctatgattccatgattcttaaca 67  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  44963359 cttacatctatgacttttctccctatgattccatgattcttaaca 44963403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 9879552 - 9879503
Alignment:
Q  283 aagattggggagatttcatgtgctcttgttactccttgctgcaacatcgt 332  Q
    ||||||||||||||||  ||||||||||||||| ||| | ||||||||||    
T  9879552 aagattggggagatttattgtgctcttgttacttctttcagcaacatcgt 9879503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 4895777 - 4895817
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgatt 60  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  4895777 ttgcttacatctatgatctttctccctatgattccatgatt 4895817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 28124625 - 28124585
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgatt 60  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  28124625 ttgcttacatctatgatctttctccctatgattccatgatt 28124585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 207 - 408
Target Start/End: Original strand, 24546227 - 24546428
Alignment:
Q  207 tttcggcagtttcgagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattctccatcaagattggggagatttcatgtgct 306  Q
    |||||| ||||||||||||||||||   ||| |||| | ||||  | |||||| | |||| | ||||||||||||||||||||| |||||||| || ||     
T  24546227 tttcggtagtttcgagtctccaattcaaccgatttctaatccttcagtcgaacaaaaattcgttggattctccatcaagattggtgagatttcttgcgca 24546326  T
Q  307 cttgttactccttgctgcaacatcgtcaatgaaaacaattatgtgtttgttgattcgcaagaagatgagaaattggaaattcttgaacctgaattgacga 406  Q
     ||||   ||||||||||||||||||||| ||| || ||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| ||    
T  24546327 gttgtcgatccttgctgcaacatcgtcaaagaagacgattgtgtgttcgttgattcgcaagaaaatgagaaattggagattcttgaacctgaattgaaga 24546426  T
Q  407 at 408  Q
    ||    
T  24546427 at 24546428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 5377071 - 5377157
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatg 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  5377071 ttgcttacatctatgacttttctccctatgattccatgattcttaacatggtatcagagcgataccctagggaggaagatgaagatg 5377157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 302
Target Start/End: Original strand, 15866935 - 15867059
Alignment:
Q  178 gaaacttcatcttctcacgatcgcatccttttcggcagtttcgagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattct 277  Q
    ||||||||| | ||||||||| ||||| ||||||||||||| || |||||||||  ||||||||| ||||||  |||||||||| |||||||||||||||    
T  15866935 gaaacttcagcctctcacgattgcatctttttcggcagttttgattctccaattgttccggtttctactccttcaatcgaaccaaaatttgatggattct 15867034  T
Q  278 ccatcaagattggggagatttcatg 302  Q
    || |||| ||||| |||||||||||    
T  15867035 ccgtcaaaattggtgagatttcatg 15867059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 178 - 302
Target Start/End: Original strand, 33867787 - 33867911
Alignment:
Q  178 gaaacttcatcttctcacgatcgcatccttttcggcagtttcgagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattct 277  Q
    ||||||||| | ||||||||| ||||| ||||||||||||| || |||||||||  ||||||||| ||||||  |||||||||| |||| ||||||||||    
T  33867787 gaaacttcagcctctcacgattgcatctttttcggcagttttgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatggattct 33867886  T
Q  278 ccatcaagattggggagatttcatg 302  Q
    || |||| ||||| |||||||||||    
T  33867887 ccgtcaaaattggtgagatttcatg 33867911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 24544841 - 24544915
Alignment:
Q  49 gattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattca 123  Q
    ||||||||||||  |||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||    
T  24544841 gattccatgattactaacatggtatcagagcgataccctagggatgaagatgatgatgcttccgctatcgattca 24544915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 33866322 - 33866413
Alignment:
Q  49 gattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattcagacatcgatgaagatga 140  Q
    |||||| |||||  |||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||   |||||||||||||    
T  33866322 gattccttgattactaacatggtatcagagcgataccctagggatgaagatgatgatgcttctgcttccgattcagcactcgatgaagatga 33866413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 14619145 - 14619239
Alignment:
Q  49 gattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattcagacatcgatgaagatgaaga 143  Q
    |||||| |||| | |||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||    |||||||||||||||    
T  14619145 gattccttgatccataacatggtatcagagcgataccctagggatgaagatgctgatgcttccgcttgcgattcagcttccgatgaagatgaaga 14619239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 15866803 - 15866869
Alignment:
Q  49 gattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctt 115  Q
    |||||| |||||  |||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  15866803 gattccttgattactaacatggtatcagagcgataccctagggatgaagatgatgatgcttccgctt 15866869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 1088691 - 1088643
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaacat 68  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1088691 ttgcttacatctatgacttctcttcctatgattccatgattcttaacat 1088643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 5378926 - 5378973
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaaca 67  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5378926 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 5378973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 14619311 - 14619389
Alignment:
Q  206 ttttcggcagtttcgagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattctccatcaa 284  Q
    ||||||| ||||||||||||||||||  ||||| ||| ||||||  |||||||||| |||| |||| ||||||| ||||    
T  14619311 ttttcggtagtttcgagtctccaattgttccggattctactccttcaatcgaaccaaaattcgatgaattctccgtcaa 14619389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 19645334 - 19645298
Alignment:
Q  24 ttacatctatgacttctctccctatgattccatgatt 60  Q
    ||||||||||||||| |||||||||||||||||||||    
T  19645334 ttacatctatgacttttctccctatgattccatgatt 19645298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 315
Target Start/End: Original strand, 33688440 - 33688592
Alignment:
Q  163 gcttctgcgattccggaaacttcatcttctcacgatcgcatccttttcggcagtttcgagtctccaattactccggtttcaactcctgtaatcgaaccag 262  Q
    |||||| |||||  |||| ||||| |||||||||||| |||  |||| ||||||||||||||||||||||||| | |||| | |||| ||||| ||||||    
T  33688440 gcttctccgattaaggaaccttcagcttctcacgatcccattgtttttggcagtttcgagtctccaattactctgatttctaatcctttaatcaaaccag 33688539  T
Q  263 aatttgatggattctccatcaagattggggagatttcatgtgctcttgttact 315  Q
    |||||||||||||||||||||| |||||||| |||||||||| |||| |||||    
T  33688540 aatttgatggattctccatcaaaattggggaaatttcatgtgttcttattact 33688592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 25076131 - 25076050
Alignment:
Q  42 tccctatgattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattca 123  Q
    |||||||||||||||||||| ||||||||||| |||| |||| |||| ||||||||||| ||||||||| | ||||||||||    
T  25076131 tccctatgattccatgattcataacatggtattagagagataacctatggaggaagatgttgatgcttctgatttcgattca 25076050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 25134100 - 25134019
Alignment:
Q  42 tccctatgattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattca 123  Q
    |||||||||||||||||||| ||||||||||| |||| |||| |||| ||||||||||| ||||||||| | ||||||||||    
T  25134100 tccctatgattccatgattcataacatggtattagagagataacctatggaggaagatgttgatgcttctgatttcgattca 25134019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 403
Target Start/End: Complemental strand, 25075896 - 25075761
Alignment:
Q  268 gatggattctccatcaagattggggagatttcatgtgctcttgttactccttgctgcaacatcgtcaatgaaaacaattatgtgtttgttgattcgcaag 367  Q
    ||||||||||||||||||||||| |||||||| || |   |  |   |||||| || ||||||||||||||| || ||| |||||  |||||||| ||||    
T  25075896 gatggattctccatcaagattggtgagatttcttgcgtaatcatcgatccttgttgtaacatcgtcaatgaagacgattctgtgtgggttgattcacaag 25075797  T
Q  368 aagatgagaaattggaaattcttgaacctgaattga 403  Q
    |||||||||||| |||  |||| |||||||||||||    
T  25075796 aagatgagaaatcggaggttctagaacctgaattga 25075761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 403
Target Start/End: Complemental strand, 25133865 - 25133730
Alignment:
Q  268 gatggattctccatcaagattggggagatttcatgtgctcttgttactccttgctgcaacatcgtcaatgaaaacaattatgtgtttgttgattcgcaag 367  Q
    ||||||||||||||||||||||| |||||||| || |   |  |   |||||| || ||||||||||||||| || ||| |||||  |||||||| ||||    
T  25133865 gatggattctccatcaagattggtgagatttcttgcgtaatcatcgatccttgttgtaacatcgtcaatgaagacgattctgtgtgggttgattcacaag 25133766  T
Q  368 aagatgagaaattggaaattcttgaacctgaattga 403  Q
    |||||||||||| |||  |||| |||||||||||||    
T  25133765 aagatgagaaatcggaggttctagaacctgaattga 25133730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 302
Target Start/End: Original strand, 9310635 - 9310897
Alignment:
Q  49 gattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattcagacatcgatgaagatgaagaatctg 148  Q
    |||||| |||||  |||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||   ||||||||||||| || | ||    
T  9310635 gattccttgattactaacatggtatcagagcgataccctagggatgatgatgatgatgcttccgcttccgattcagcactcgatgaagatgacgattttg 9310734  T
Q  149 at---gatgcagcttctgc---ttctgcg---attccggaaacttcatcttctcacgatcgcatccttttcggcagtttcgagtctccaattactccggt 239  Q
     |   |||| || |  |||   ||||||    ||||  ||||||||| | ||||||||| ||||| ||||||||||||| || |||||||||  ||||||    
T  9310735 ttagtgatgaagttcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttcggcagttttgattctccaattgttccggt 9310834  T
Q  240 ttcaactcctgtaatcgaaccagaatttgatggattctccatcaagattggggagatttcatg 302  Q
    ||| ||||||  |||||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  9310835 ttctactccttcaatcgaaccaaaatttgatggattctccgtcaaaattggtgagatttcatg 9310897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 49 - 302
Target Start/End: Original strand, 3283024 - 3283292
Alignment:
Q  49 gattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcg------attcagacatcgatgaagatgaag 142  Q
    |||||| |||||  |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||      ||||||   ||||||||||||| |    
T  3283024 gattccttgattactaacatggtatcagagcgataccctagggatgaagatgatgatgcttccgcttccgcttccgattcagtactcgatgaagatgacg 3283123  T
Q  143 aatctgat---gatgcagcttctgc---ttctgcg---attccggaaacttcatcttctcacgatcgcatccttttcggcagtttcgagtctccaattac 233  Q
    | |||| |   |||| || |  |||   ||||||    ||||  ||||||||| | ||||||||| ||||| ||||||||||||| || |||||||||      
T  3283124 attctgttagtgatgaagttcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttcggcagttttgattctccaattgt 3283223  T
Q  234 tccggtttcaactcctgtaatcgaaccagaatttgatggattctccatcaagattggggagatttcatg 302  Q
    ||||||||| ||||||  |||||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  3283224 tccggtttctactccttcaatcgaaccaaaatttgatggattctccgtcaaaattggtgagatttcatg 3283292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 17449503 - 17449589
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaacatggtatcagagtgataccctagggaggaagatgatgatg 106  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  17449503 ttgcttacatctatgacctttctccctatgattccatgattcttaacatggtatcagagcgataccctaggaaggaagatgaagatg 17449589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 5926140 - 5926042
Alignment:
Q  206 ttttcggcagtttcgagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattctccatcaagattggggagatttcatgtg 304  Q
    |||||| ||||||||| |||||||  | || |||||||| ||||  |||||||||| ||||||||||| | |||||||||||||| ||  |||||||||    
T  5926140 ttttcgacagtttcgattctccaaacaatctggtttcaaatccttcaatcgaaccaaaatttgatggaatgtccatcaagattggtgatttttcatgtg 5926042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 16808616 - 16808576
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgatt 60  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  16808616 ttgcttacatctatgatctttctccctatgattccatgatt 16808576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 30224423 - 30224471
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaacat 68  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30224423 ttgcttacatctatgacttttctccctatgattccatgattcttaacat 30224471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 6428937 - 6428981
Alignment:
Q  23 cttacatctatgacttctctccctatgattccatgattcttaaca 67  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  6428937 cttacatctatgacttctctccttatgattccatgattcttaaca 6428981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 5567619 - 5567665
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaac 66  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  5567619 ttgcttacatctatgacttttctccctatgattccatgatttttaac 5567665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 3375469 - 3375424
Alignment:
Q  23 cttacatctatgacttctctccctatgattccatgattcttaacat 68  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  3375469 cttacatctatgacctttctccctatgattccatgattcttaacat 3375424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 25249199 - 25249246
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaaca 67  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  25249199 ttgcttacatatatgacttttctccctatgatttcatgattcttaaca 25249246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 29758313 - 29758361
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattcttaacat 68  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29758313 ttgcttacatctatgacttttctccctatgattccatgattcttaacat 29758361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 18739909 - 18739966
Alignment:
Q  66 catggtatcagagtgataccctagggaggaagatgatgatgcttccgctttcgattca 123  Q
    |||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  18739909 catggtattagagtgatacactaggaaggaagatggtgatgcttccgctttcgattca 18739966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 19138 - 19180
Alignment:
Q  20 ttgcttacatctatgacttctctccctatgattccatgattct 62  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  19138 ttgcttacatctatgatttttctccctatgattccatgattct 19180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University