View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4213_low_6 (Length: 418)
Name: NF4213_low_6
Description: NF4213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4213_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 30047808 - 30048218
Alignment:
| Q |
1 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30047808 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
30047907 |
T |
|
| Q |
101 |
tagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaatcttctagttttgaagaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30047908 |
tagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaaccttctagttttgaagaagc |
30048007 |
T |
|
| Q |
201 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048008 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaat |
30048107 |
T |
|
| Q |
301 |
gtgataggagttaaatgggtttacagaaccaagataaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048108 |
gtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
30048207 |
T |
|
| Q |
401 |
ctggaattgat |
411 |
Q |
| |
|
||||||||||| |
|
|
| T |
30048208 |
ctggaattgat |
30048218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 7160165 - 7160575
Alignment:
| Q |
1 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7160165 |
tattgggattggaaaaatgatgaggttcaaagaagtacagaatctgctgaaagtgctcatgacaaacaagaggacacaacaaatgaagatgaaaatcaga |
7160264 |
T |
|
| Q |
101 |
tagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaatcttctagttttgaagaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
7160265 |
tagctgaatctgattccccaattctaaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtgaattaaccttctagttttgaagaagc |
7160364 |
T |
|
| Q |
201 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaat |
300 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7160365 |
ttcattaataacataatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgagaactcactcaaagacctaaagataaaaat |
7160464 |
T |
|
| Q |
301 |
gtgataggagttaaatgggtttacagaaccaagataaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7160465 |
gtgataggagttaaatgggtttacaaaaccaagttaaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
7160564 |
T |
|
| Q |
401 |
ctggaattgat |
411 |
Q |
| |
|
||||||||||| |
|
|
| T |
7160565 |
ctggaattgat |
7160575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 198207 - 197797
Alignment:
| Q |
1 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198207 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
198108 |
T |
|
| Q |
101 |
tagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaatcttctagttttgaagaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
198107 |
tagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaaccttctagttttgaagaagc |
198008 |
T |
|
| Q |
201 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198007 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaat |
197908 |
T |
|
| Q |
301 |
gtgataggagttaaatgggtttacagaaccaagataaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197907 |
gtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
197808 |
T |
|
| Q |
401 |
ctggaattgat |
411 |
Q |
| |
|
||||||||||| |
|
|
| T |
197807 |
ctggaattgat |
197797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 3944062 - 3944472
Alignment:
| Q |
1 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3944062 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
3944161 |
T |
|
| Q |
101 |
tagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaatcttctagttttgaagaagc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3944162 |
tagctgaatctgattccctaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaaccttctagttttgaagaagc |
3944261 |
T |
|
| Q |
201 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3944262 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaat |
3944361 |
T |
|
| Q |
301 |
gtgataggagttaaatgggtttacagaaccaagataaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3944362 |
gtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
3944461 |
T |
|
| Q |
401 |
ctggaattgat |
411 |
Q |
| |
|
||||||||||| |
|
|
| T |
3944462 |
ctggaattgat |
3944472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 39951368 - 39950958
Alignment:
| Q |
1 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951368 |
tattgggattgggaaaattatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
39951269 |
T |
|
| Q |
101 |
tagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaatcttctagttttgaagaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
39951268 |
tagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgtgaatgaaccttctagttttgaagaagc |
39951169 |
T |
|
| Q |
201 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951168 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaat |
39951069 |
T |
|
| Q |
301 |
gtgataggagttaaatgggtttacagaaccaagataaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951068 |
gtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
39950969 |
T |
|
| Q |
401 |
ctggaattgat |
411 |
Q |
| |
|
||||||||||| |
|
|
| T |
39950968 |
ctggaattgat |
39950958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 26220102 - 26219692
Alignment:
| Q |
1 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
100 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26220102 |
tattcggattgagaaaatgatgaggtttaaattagtacaaaatctgctgaaattgctcctgacaaacaagagcacataacaaatgaagatgaaaatcaga |
26220003 |
T |
|
| Q |
101 |
tagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaa-ttgcaattttgttgagaatgaatcttctagttttgaagaag |
199 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||| | |||||||||| ||||||| |
|
|
| T |
26220002 |
tagctgaatttgattccccaattctaaggagcaaatctctggctgaagtttatgaaaaattgcaattttgttgtgaataagccttctagttt-gaagaag |
26219904 |
T |
|
| Q |
200 |
cttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaa |
299 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||| || | ||||||||||||||||| |||||||||||| |||||| || |||||||| |
|
|
| T |
26219903 |
tttcattgctaacagaatggaaagatgaaatgaaggaggagctactaactattaataaaaatggtacttgggaactcacttcaagacccaatgataaaaa |
26219804 |
T |
|
| Q |
300 |
tgtgataggagttaaatgggtttacagaaccaagataaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatg |
399 |
Q |
| |
|
||| |||| |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26219803 |
tgtaatagatgttaaatgggtttatagaaccaagttaaatcctgatggttccattcacaaacacaaagcaaggcttgctgtgaaaggatattctcaaatg |
26219704 |
T |
|
| Q |
400 |
gctggaattgat |
411 |
Q |
| |
|
||||||||||| |
|
|
| T |
26219703 |
actggaattgat |
26219692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 22363690 - 22364100
Alignment:
| Q |
1 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22363690 |
tattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcaga |
22363789 |
T |
|
| Q |
101 |
tagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaatcttctagttttgaagaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
22363790 |
tagctgaatctgattccccaattctaaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtgaatgaaccttctagttttgaagaagc |
22363889 |
T |
|
| Q |
201 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22363890 |
ttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggcacatgggaactcactcaaagacctaaagataaaaat |
22363989 |
T |
|
| Q |
301 |
gtgataggagttaaatgggtttacagaaccaagataaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaatgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22363990 |
gtgataggagttaaatgggtttacagaaccaagttaaatcctgatggatccattcacaaacacaaaacaaggcttgttgtgaaaggatattctcaaatgg |
22364089 |
T |
|
| Q |
401 |
ctggaattgat |
411 |
Q |
| |
|
|| |||||||| |
|
|
| T |
22364090 |
ctagaattgat |
22364100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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