View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4213_low_8 (Length: 264)
Name: NF4213_low_8
Description: NF4213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4213_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 34644537 - 34644781
Alignment:
| Q |
1 |
acgacaaaacaactatcatttcattgaaaactgaagaactgagttatacaatgtacaaaagagctttatctaccactatatctagttgaaaactaacatg |
100 |
Q |
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| T |
34644537 |
acgacaaaacaactatcatttcattgaaaactgaagaactgagttatacaatgtacaaaagagctttatctaccactatatctagttgaaa-ctaacatg |
34644635 |
T |
|
| Q |
101 |
attgcattagcttgtaactaacttataacatcttctaataacatgttgtcttaagatcctagataatcttcacaacagaattttgcaaggtggagcaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
34644636 |
attgcattagcttgtaactaacttataacatcttctaataacatgttgtcttaagatcctagataatcttcacaatagaactttgcaaggtggagcaaca |
34644735 |
T |
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| Q |
201 |
gtttcaagaatttaatggaaaaatggaagttattttgcaatgatga |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34644736 |
gtttcaagaatttaatggaaaaatggaagttattttgcaatgatga |
34644781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34636495 - 34636556
Alignment:
| Q |
1 |
acgacaaaacaactatcatttcattgaaaactgaagaactgagttatacaatgtacaaaaga |
62 |
Q |
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|||| |||||||||||||||| ||||||| ||| | | |||||||||| |||||||||||| |
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| T |
34636495 |
acgagaaaacaactatcatttatttgaaaattgaggcattgagttatacgatgtacaaaaga |
34636556 |
T |
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