View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4214_high_8 (Length: 223)

Name: NF4214_high_8
Description: NF4214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4214_high_8
NF4214_high_8
[»] chr3 (7 HSPs)
chr3 (16-206)||(46974860-46975050)
chr3 (18-206)||(46997925-46998113)
chr3 (18-206)||(47001617-47001805)
chr3 (16-206)||(46980849-46981037)
chr3 (120-191)||(46955859-46955930)
chr3 (19-206)||(46995666-46995865)
chr3 (124-172)||(46958719-46958767)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 46974860 - 46975050
Alignment:
Q  16 tgtggaaaccatctattgtggataggttgatgtgaaatcggaacaggaacatgaatatcattttgaaatatcttagaaaatgagttnnnnnnntaccaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||       | |||||    
T  46974860 tgtggaaaccatctattgtggataggttgatgtgaaatcggaacaagaacatgaatatcattttgaaatatctcagaaaatgagttaaagaaattccaat 46974959  T
Q  116 aaccagtcccatcacctatacaatgattcatggaacaacctataaaaacaccatccaataattcagttacttgaatagttaacaaagacat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46974960 aaccagtcccatcacctatacaatgattcatggaacaacctataaaaacaccatccaataattcagttacttgaatagttaataaagacat 46975050  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 46997925 - 46998113
Alignment:
Q  18 tggaaaccatctattgtggataggttgatgtgaaatcggaacaggaacatgaatatcattttgaaatatcttagaaaatgagttnnnnnnntaccaataa 117  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||       | |||||||    
T  46997925 tggaaaccatctattgtgaataggtttatgtgaaatcggaacaggaacatgaacatcattttgaaatatctcagaaaatgagttaaagaaattccaataa 46998024  T
Q  118 ccagtcccatcacctatacaatgattcatggaacaacctataaaaacaccatccaataattcagttacttgaatagttaacaaagacat 206  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |  |||||||||||    
T  46998025 ccagttccatcaccaatacaatgattcatggaacaacctataaaaacactatccaataattcagtaacttgaatggacaacaaagacat 46998113  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 47001617 - 47001805
Alignment:
Q  18 tggaaaccatctattgtggataggttgatgtgaaatcggaacaggaacatgaatatcattttgaaatatcttagaaaatgagttnnnnnnntaccaataa 117  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||       | |||||||    
T  47001617 tggaaaccatcttttgtgaataggtttatgtgaaatcggaacaggaacatgaacatcattttgaaatatctccgaaaatgtgttgaagaaattccaataa 47001716  T
Q  118 ccagtcccatcacctatacaatgattcatggaacaacctataaaaacaccatccaataattcagttacttgaatagttaacaaagacat 206  Q
     | || |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||  |||||||||||    
T  47001717 gctgttccatcaccaatacaatgattcatggaacaacctatgaaaacaccatccaataattcagtgacttgaatagacaacaaagacat 47001805  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 46980849 - 46981037
Alignment:
Q  16 tgtggaaaccatctattgtggataggttgatgtgaaatcggaacaggaacatgaatatcattttgaaatatcttagaaaatgagttnnnnnnntaccaat 115  Q
    |||||||||||||| ||||||||||||||||||||||| ||||  | | || ||| ||||||||||||||||| |||||||| |||       | |||||    
T  46980849 tgtggaaaccatctcttgtggataggttgatgtgaaatgggaa--gcagcaggaacatcattttgaaatatctcagaaaatgtgttgaagaaattccaat 46980946  T
Q  116 aaccagtcccatcacctatacaatgattcatggaacaacctataaaaacaccatccaataattcagttacttgaatagttaacaaagacat 206  Q
    || | || |||||||  | ||||||||||||||||||||| || ||||||||||| | ||||||||| ||||||||||  |||||||||||    
T  46980947 aagctgttccatcacaaagacaatgattcatggaacaaccaatgaaaacaccatctactaattcagtgacttgaatagacaacaaagacat 46981037  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 46955859 - 46955930
Alignment:
Q  120 agtcccatcacctatacaatgattcatggaacaacctataaaaacaccatccaataattcagttacttgaat 191  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||||||||  |||||| || ||||||||    
T  46955859 agtcccatcaccaatacaatggttcatggaacaacctatgaaaacaccatcccctaattccgtgacttgaat 46955930  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 46995666 - 46995865
Alignment:
Q  19 ggaaaccatctattgtggataggttgatgtgaaatcggaacaggaacatgaatatca------------ttttgaaatatcttagaaaatgagttnnnnn 106  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||| ||||| ||||            ||||||||||||| ||||| ||  ||         
T  46995666 ggaaaccatctattgtgaataggttggtgtgaaataggaacaggaatatgaacatcaacatcaacaaccttttgaaatatctcagaaagtgtattaaaga 46995765  T
Q  107 nntaccaataaccagtcccatcacctatacaatgattcatggaacaacctataaaaacaccatccaataattcagttacttgaatagttaacaaagacat 206  Q
      | ||||||| |||| |||||||| | |   || ||||||||||||||||| |||||||| || ||||||||||| |||||||| |  |||||||||||    
T  46995766 aattccaataagcagttccatcaccaacagcgtggttcatggaacaacctatgaaaacaccgtctaataattcagtgacttgaatggacaacaaagacat 46995865  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 46958719 - 46958767
Alignment:
Q  124 ccatcacctatacaatgattcatggaacaacctataaaaacaccatcca 172  Q
    |||||||| ||||||||||||| |||||||||||| |||||||||||||    
T  46958719 ccatcaccaatacaatgattcagggaacaacctatgaaaacaccatcca 46958767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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