View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4214_low_2 (Length: 508)
Name: NF4214_low_2
Description: NF4214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4214_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 81 - 446
Target Start/End: Complemental strand, 35769721 - 35769356
Alignment:
| Q |
81 |
gtttgacattgtaagtttaaatttaaatactaatattgttgctcttatgagtcagcaatggcttgctctgttgagacatgtcttgtgcatgatgcataat |
180 |
Q |
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| T |
35769721 |
gtttgacattgtaagtttaaatttaaatactaatgttgttgctcttatgagtcagcaatggcttgctctgttgagacatgtcttgtgcatgatgcataat |
35769622 |
T |
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| Q |
181 |
actagataatggaagacttttcactagttaggataagaaaactcaaactcgacgcagctctcctatttctcannnnnnnaatctgttacattctaatatt |
280 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||| || |
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| T |
35769621 |
actagataatgggagacttttcactagttaggataagaaaactcaaactcgacgcagctctcatctttctcattttttaaatctgtt-cattctaatgtt |
35769523 |
T |
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| Q |
281 |
gttgccataac-tttaagtctgcaagacttctgtttcaatctttataatactatgcttaatcacgaggtacccattagggattacacccataatccatct |
379 |
Q |
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||||||||||| |||| ||||| ||||||||||||| | ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35769522 |
gttgccataacttttatgtctggaagacttctgttttagtctttataatactctgtttaatcacgaggtacccattagggattatacccataatccatct |
35769423 |
T |
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| Q |
380 |
ataagtccgattaatatattttttattttgttaatctatgtcaaaattattcaattatgagtcataa |
446 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35769422 |
ataagtccgattaatatattatttattttgttaatctatgtcaaaactattcaattatgagtcataa |
35769356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 35769816 - 35769765
Alignment:
| Q |
12 |
atagggcggctggggttgataaagctagctaggtcttataattcaccataac |
63 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35769816 |
atagggcggctagggttgataaagctagctaggtcttataattcaccataac |
35769765 |
T |
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