View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4214_low_5 (Length: 405)

Name: NF4214_low_5
Description: NF4214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4214_low_5
NF4214_low_5
[»] chr5 (2 HSPs)
chr5 (216-388)||(37259522-37259695)
chr5 (92-136)||(37266222-37266266)
[»] chr6 (1 HSPs)
chr6 (245-375)||(22216765-22216897)
[»] chr8 (1 HSPs)
chr8 (245-385)||(33097591-33097733)
[»] scaffold0073 (2 HSPs)
scaffold0073 (252-388)||(30520-30658)
scaffold0073 (252-388)||(38046-38184)
[»] chr4 (1 HSPs)
chr4 (284-388)||(21984799-21984902)
[»] scaffold1175 (1 HSPs)
scaffold1175 (256-375)||(1005-1126)
[»] chr7 (2 HSPs)
chr7 (252-354)||(37484252-37484356)
chr7 (92-136)||(16887506-16887550)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 216 - 388
Target Start/End: Complemental strand, 37259695 - 37259522
Alignment:
Q  216 aattaaaactcataaaccttcaattgaaaaagagcaagtctatgactgatgaggt-aagaagttaaaac--ttttgttttaggtcaactttaacattaac 312  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||| || ||||||||||  |||||||| ||||||||||||| |||| |    
T  37259695 aattaaaactcataaaccttcaattgaagaagatcaagtctgtgactaatgaggtaaaaaagttaaaactgttttgtttcaggtcaactttaatattagc 37259596  T
Q  313 tgctcattaatttgatcaaattgttatagtatgacttaatggctcggaagaagaaaccttgtttgagtaaattagt 388  Q
    ||||||||| ||| ||  ||||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||    
T  37259595 tgctcattagttttat-taattgttat-ggatgacttaatggttcggaagaagaaaccttgtttgaataaattagt 37259522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 37266266 - 37266222
Alignment:
Q  92 atcttcttccctccgttgttcttcatcttcatcatcaccttcatc 136  Q
    |||||||||||||  |||||||||||||||||||||| |||||||    
T  37266266 atcttcttccctctcttgttcttcatcttcatcatcatcttcatc 37266222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 245 - 375
Target Start/End: Complemental strand, 22216897 - 22216765
Alignment:
Q  245 aagagcaagtctatgactgatgaggtaag-aagttaaaact--tttgttttaggtcaactttaacattaactgctcattaatttgatcaaattgttatag 341  Q
    |||| ||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |    
T  22216897 aagatcaagtatatgactgatgaggtaagcaagttaaaactgttttgttttaggtcaactttaaccttagctgctcattaatttgatc-aattgttatgg 22216799  T
Q  342 tatgacttaatggctcggaagaagaaaccttgtt 375  Q
    | ||||||||||| || |||||||||||||||||    
T  22216798 tgtgacttaatggttcagaagaagaaaccttgtt 22216765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 385
Target Start/End: Complemental strand, 33097733 - 33097591
Alignment:
Q  245 aagagcaagtctatgactgatgaggtaagaa-gttaaaact--tttgttttaggtcaactttaacattaactgctcattaatttgatcaaattgttatag 341  Q
    |||| ||||||||||  |||| ||||||| | |||||||||  |||||||||||||||||||||||||| || ||||||| ||| ||| ||||||||| |    
T  33097733 aagaccaagtctatggttgataaggtaagcatgttaaaactattttgttttaggtcaactttaacattagctactcattagtttcatc-aattgttatgg 33097635  T
Q  342 tatgacttaatggctcggaagaagaaaccttgtttgagtaaatt 385  Q
    ||||||||||||| || | || ||||||||||||||| ||||||    
T  33097634 tatgacttaatggttcaggagtagaaaccttgtttgaataaatt 33097591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 388
Target Start/End: Complemental strand, 30658 - 30520
Alignment:
Q  252 agtctatgactgatgaggtaag-aagttaaaact--tttgttttaggtcaactttaacattaactgctcattaatttgatcaaattgttatagtatgact 348  Q
    ||||||||| |||||||||||| ||||||| |||  |||||| || |||||||||||||||| || ||||||||||| ||| | ||||||| ||||||||    
T  30658 agtctatgattgatgaggtaagcaagttaagactattttgttgtacgtcaactttaacattagctactcattaatttcatc-agttgttatggtatgact 30560  T
Q  349 taatgg-ctcggaagaagaaaccttgtttgagtaaattagt 388  Q
    |||||| || || || ||||||||||||||| |||||||||    
T  30559 taatggtctagg-agtagaaaccttgtttgaataaattagt 30520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 388
Target Start/End: Complemental strand, 38184 - 38046
Alignment:
Q  252 agtctatgactgatgaggtaag-aagttaaaact--tttgttttaggtcaactttaacattaactgctcattaatttgatcaaattgttatagtatgact 348  Q
    ||||||||| |||||||||||| ||||||| |||  |||||| || |||||||||||||||| || ||||||||||| ||| | ||||||| ||||||||    
T  38184 agtctatgattgatgaggtaagcaagttaagactattttgttgtacgtcaactttaacattagctactcattaatttcatc-agttgttatggtatgact 38086  T
Q  349 taatgg-ctcggaagaagaaaccttgtttgagtaaattagt 388  Q
    |||||| || || || ||||||||||||||| |||||||||    
T  38085 taatggtctagg-agtagaaaccttgtttgaataaattagt 38046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 284 - 388
Target Start/End: Complemental strand, 21984902 - 21984799
Alignment:
Q  284 ttttgttttaggtcaactttaacattaactgctcattaatttgatcaaattgttatagtatgacttaatggctcggaagaagaaaccttgtttgagtaaa 383  Q
    ||||||||||| |||||||||||||||||||||| ||| ||| ||| ||||||||| |||||||||||||| ||   || ||||| ||||||||| ||||    
T  21984902 ttttgttttagttcaactttaacattaactgctcgttagtttcatc-aattgttatggtatgacttaatggttcaagagtagaaatcttgtttgaataaa 21984804  T
Q  384 ttagt 388  Q
    |||||    
T  21984803 ttagt 21984799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1175 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1175
Description:

Target: scaffold1175; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 375
Target Start/End: Original strand, 1005 - 1126
Alignment:
Q  256 tatgactgatgaggtaag-aagttaaaact--tttgttttaggtcaactttaacattaactgctcattaatttgatcaaattgttatagtatgacttaat 352  Q
    |||||| |||||||| || |||||||||||  |||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||| |  |||||||||    
T  1005 tatgacggatgaggtcagcaagttaaaactgttttgttttaggtcaactttaaccttagctgctcattagtttgatc-aattgttatggcgtgacttaat 1103  T
Q  353 ggctcggaagaagaaaccttgtt 375  Q
    || |   ||||||||||||||||    
T  1104 ggtttaaaagaagaaaccttgtt 1126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 37484252 - 37484356
Alignment:
Q  252 agtctatgactgatgaggtaag-aagttaaaact--tttgttttaggtcaactttaacattaactgctcattaatttgatcaaattgttatagtatgact 348  Q
    ||||||||| |||||||| ||| ||||||| |||  |||||||||||||||||||||||| | || ||||||| ||| ||| | ||||||| ||||||||    
T  37484252 agtctatgattgatgaggcaagcaagttaagactattttgttttaggtcaactttaacataagctactcattagtttcatc-agttgttatggtatgact 37484350  T
Q  349 taatgg 354  Q
    ||||||    
T  37484351 taatgg 37484356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 16887550 - 16887506
Alignment:
Q  92 atcttcttccctccgttgttcttcatcttcatcatcaccttcatc 136  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  16887550 atcttctttcctcctttgttcttcatcttcatcatcaccttcatc 16887506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University