View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4214_low_6 (Length: 303)
Name: NF4214_low_6
Description: NF4214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4214_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 31650680 - 31650396
Alignment:
| Q |
1 |
aagatgtgtttgtagttgaatggaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttggtttaggaatacgaagagttaagatgat |
100 |
Q |
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| T |
31650680 |
aagatgtgtttgtagttgaatggaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttggtttaggaatacgaagagttaagataat |
31650581 |
T |
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| Q |
101 |
aagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtccaacatattattagcgacggttttcgaagtcccacgttagagtgcttgaatttc |
200 |
Q |
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| T |
31650580 |
aagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtccaacatattattagcgacggttttcgaagtcccacgctagagtgcttgaatttc |
31650481 |
T |
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| Q |
201 |
accataacaatttttgaagatgaataaatgaattaaaatctgaaaactgaattaatttgaataggaaagaatgagacctattaaa |
285 |
Q |
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| T |
31650480 |
accataacaatttttgaagatgaatgaatgaattaaaatctgaaaactgaattaatttgaataggaaagaatgagacctattaaa |
31650396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 31654156 - 31653895
Alignment:
| Q |
8 |
gtttgtagttgaatggaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttggtttaggaatacgaagagttaagatgataagaatg |
107 |
Q |
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| T |
31654156 |
gtttgtagttgaatcaaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttagtttagggatacgaagagttaagataataagaatg |
31654057 |
T |
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| Q |
108 |
aggaatgtgaaagtcacaaacaatgtgaggaacaatgtccaacatattattagcgacggttttcgaagtcccacgttagagtgcttgaatttcacca-ta |
206 |
Q |
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| T |
31654056 |
aggaatgtgaaagtcacaaacaatgtgaggaacaatgtccagcatgttattagcgatggttttcgaagtcctacgttagagtgcttgaatttcaccatta |
31653957 |
T |
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| Q |
207 |
acaatttttgaagatgaataaatgaattaaaatctgaaaactgaattaatttgaataggaaa |
268 |
Q |
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| T |
31653956 |
acagtttttaaagatgaatgaatgaattaaaatctaaaaactgaattaatttgaattggaaa |
31653895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 31635538 - 31635434
Alignment:
| Q |
1 |
aagatgtgtttgtagttgaatggaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttggtttaggaatacgaagagttaagatgat |
100 |
Q |
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| T |
31635538 |
aagatatgtttgtagttgaattgaagaaaaacctgagattgttaatatgagtgatggagttgaggtgtttgggtttagggatacggagagataagagaat |
31635439 |
T |
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| Q |
101 |
aagaa |
105 |
Q |
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||||| |
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| T |
31635438 |
aagaa |
31635434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 31643507 - 31643411
Alignment:
| Q |
9 |
tttgtagttgaatggaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttggtttaggaatacgaagagttaagatgataagaa |
105 |
Q |
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| T |
31643507 |
tttgttgttgaattgaagaaaaacctgagagtgttaatatgagtgatggagttgaggtgtttgggtttagggatacggagagataagagaataagaa |
31643411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 31628967 - 31628810
Alignment:
| Q |
81 |
atacgaagagttaagatgataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtccaacatattattagcgacggttttcgaagtccca |
180 |
Q |
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||||| |||||||||| || |||||||| |||||||| |||||||||||||||| || ||||||| | | | ||| |||||||||||| |||| | |
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| T |
31628967 |
atacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaagatcaatgtctgagacgctgttaacgacggttttcgtggtccaa |
31628868 |
T |
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| Q |
181 |
cgttagagtgcttgaatttcaccataacaatttttgaagatgaataaatgaattaaaa |
238 |
Q |
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|||||| ||||||||||||||| | ||||||||||||||| |||||||||||| |
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| T |
31628867 |
gacgagagtgtctgaatttcaccataatagtttttgaagatgaatgaatgaattaaaa |
31628810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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