View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4214_low_8 (Length: 245)

Name: NF4214_low_8
Description: NF4214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4214_low_8
NF4214_low_8
[»] chr4 (3 HSPs)
chr4 (1-238)||(32000851-32001088)
chr4 (1-238)||(31941892-31942129)
chr4 (135-204)||(36246545-36246614)
[»] chr7 (2 HSPs)
chr7 (135-202)||(2950124-2950191)
chr7 (3-51)||(28944732-28944780)
[»] chr5 (1 HSPs)
chr5 (110-238)||(18478948-18479076)
[»] chr2 (1 HSPs)
chr2 (149-204)||(37881306-37881361)
[»] chr3 (2 HSPs)
chr3 (167-204)||(20732617-20732654)
chr3 (167-204)||(20740353-20740390)
[»] chr8 (3 HSPs)
chr8 (165-201)||(9622097-9622133)
chr8 (171-201)||(7195709-7195739)
chr8 (159-204)||(39916910-39916955)
[»] chr1 (2 HSPs)
chr1 (172-211)||(27632581-27632620)
chr1 (168-223)||(45594286-45594341)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 32001088 - 32000851
Alignment:
Q  1 caagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001088 caagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtga 32000989  T
Q  101 atgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000988 atgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgtt 32000889  T
Q  201 cttcttggaagttgtgctgctattgctgaccatctgtg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32000888 cttcttggaagttgtgctgctattgctgaccatctgtg 32000851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31942129 - 31941892
Alignment:
Q  1 caagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942129 caagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtga 31942030  T
Q  101 atgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942029 atgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgtt 31941930  T
Q  201 cttcttggaagttgtgctgctattgctgaccatctgtg 238  Q
    |||||||||||||| |||||||||||||||||||||||    
T  31941929 cttcttggaagttgagctgctattgctgaccatctgtg 31941892  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 36246614 - 36246545
Alignment:
Q  135 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 204  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  36246614 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 36246545  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 2950191 - 2950124
Alignment:
Q  135 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttct 202  Q
    ||||||||| | |||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  2950191 attcccattttggttaatcttttcttaagatgtgtgttccaatagttcttgatttcattatctgttct 2950124  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 28944732 - 28944780
Alignment:
Q  3 agtcttgcttctgcttccaaacgagcactctcccattgagccatgtgac 51  Q
    ||||||||||||||||| |  |  |||||||||||||||||||||||||    
T  28944732 agtcttgcttctgcttcaagccttgcactctcccattgagccatgtgac 28944780  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 18479076 - 18478948
Alignment:
Q  110 ttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttgga 209  Q
    ||||||||||||||| || || ||||| ||||||||  | ||||||||||||| ||   ||||||| |  ||||| |||||||| |||||||| |||||     
T  18479076 ttttggtttgtgagtggtgggatctatccccattctgatgagtcttttcttgatgttaatgttccaatgattctttatttcattatctgttctccttggc 18478977  T
Q  210 agttgtgctgctattgctgaccatctgtg 238  Q
    ||  | ||||||||||  |||||||||||    
T  18478976 aggagagctgctattgtggaccatctgtg 18478948  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 37881306 - 37881361
Alignment:
Q  149 tagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 204  Q
    |||||||||| | | ||| ||||||||||||||||| |||||||||||||||||||    
T  37881306 tagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttc 37881361  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 20732617 - 20732654
Alignment:
Q  167 tgtgttccagtagttcttgatttcattgtctgttcttc 204  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20732617 tgtgttccagtagttctttatttcattgtctgttcttc 20732654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 20740353 - 20740390
Alignment:
Q  167 tgtgttccagtagttcttgatttcattgtctgttcttc 204  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20740353 tgtgttccagtagttctttatttcattgtctgttcttc 20740390  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 9622133 - 9622097
Alignment:
Q  165 tgtgtgttccagtagttcttgatttcattgtctgttc 201  Q
    |||||||||||||||||||| ||||||||||||||||    
T  9622133 tgtgtgttccagtagttctttatttcattgtctgttc 9622097  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 201
Target Start/End: Complemental strand, 7195739 - 7195709
Alignment:
Q  171 ttccagtagttcttgatttcattgtctgttc 201  Q
    |||||||||||||||||||||||||||||||    
T  7195739 ttccagtagttcttgatttcattgtctgttc 7195709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 39916955 - 39916910
Alignment:
Q  159 ttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 204  Q
    |||| ||| |||||||| ||||||||||| ||||||||||||||||    
T  39916955 ttgatgtgagtgttccaatagttcttgatctcattgtctgttcttc 39916910  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 27632581 - 27632620
Alignment:
Q  172 tccagtagttcttgatttcattgtctgttcttcttggaag 211  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  27632581 tccaatagttcttgatttcattgtctgttcttcctggaag 27632620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 45594286 - 45594341
Alignment:
Q  168 gtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctat 223  Q
    |||||||| |||||||| || |||||||||||||||| ||| ||||| ||||||||    
T  45594286 gtgttccaatagttcttaatctcattgtctgttcttcctggtagttgagctgctat 45594341  T

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