View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4214_low_9 (Length: 241)
Name: NF4214_low_9
Description: NF4214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4214_low_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 46239213 - 46238981
Alignment:
| Q |
9 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctccac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46239213 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctcaac |
46239114 |
T |
|
| Q |
109 |
aaaaatctgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatcc |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239113 |
aaaaatttgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatcc |
46239014 |
T |
|
| Q |
209 |
attttacaccacagcctaatctcatggtcttga |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
46239013 |
attttacaccacagcctaatctcatggtcttga |
46238981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 3455444 - 3455676
Alignment:
| Q |
9 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctccac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3455444 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctcaac |
3455543 |
T |
|
| Q |
109 |
aaaaatctgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatcc |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3455544 |
aaaaatttgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgctgtctagatcaacttgaacaaagtcattctcaatcctatcc |
3455643 |
T |
|
| Q |
209 |
attttacaccacagcctaatctcatggtcttga |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3455644 |
attttacaccacagcctaatctcatggtcttga |
3455676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University