View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4215_high_15 (Length: 274)

Name: NF4215_high_15
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4215_high_15
NF4215_high_15
[»] chr7 (5 HSPs)
chr7 (1-257)||(34719868-34720124)
chr7 (39-232)||(34715143-34715333)
chr7 (21-170)||(34729789-34729938)
chr7 (12-148)||(18925424-18925560)
chr7 (7-170)||(34734339-34734502)
[»] chr4 (18 HSPs)
chr4 (1-154)||(6592217-6592370)
chr4 (1-151)||(6833264-6833414)
chr4 (1-151)||(6625848-6625998)
chr4 (1-154)||(6793310-6793463)
chr4 (21-150)||(6667102-6667231)
chr4 (11-151)||(6716374-6716514)
chr4 (12-148)||(7889685-7889821)
chr4 (1-151)||(6648017-6648167)
chr4 (1-151)||(21227102-21227252)
chr4 (1-145)||(6549380-6549524)
chr4 (83-153)||(10034728-10034798)
chr4 (75-151)||(6749817-6749893)
chr4 (79-151)||(4332495-4332567)
chr4 (1-145)||(6770394-6770538)
chr4 (1-154)||(6537055-6537208)
chr4 (28-148)||(6501369-6501489)
chr4 (75-151)||(6712613-6712689)
chr4 (75-151)||(6812692-6812768)
[»] chr6 (12 HSPs)
chr6 (57-154)||(5092784-5092881)
chr6 (57-153)||(5149863-5149959)
chr6 (39-161)||(5443943-5444065)
chr6 (77-161)||(5422042-5422126)
chr6 (39-153)||(5264391-5264505)
chr6 (57-161)||(5429438-5429542)
chr6 (50-161)||(5107934-5108045)
chr6 (116-161)||(5185076-5185121)
chr6 (39-148)||(5394196-5394305)
chr6 (50-154)||(5160652-5160756)
chr6 (77-161)||(5358315-5358399)
chr6 (50-153)||(5340401-5340504)
[»] scaffold0552 (1 HSPs)
scaffold0552 (75-151)||(164-240)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 34719868 - 34720124
Alignment:
Q  1 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34719868 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagatg 34719967  T
Q  101 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctttcctaaaatnnnnnnntaaagcaaattagcaaagcttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||     
T  34719968 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctttcctaaaataaaaaaataaagcaaattagcaaagcttgt 34720067  T
Q  201 gtactagctaaatacctggtatgctattaacatcaaccatctgttttgaaacttgta 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34720068 gtactagctaaatacctggtatgctattaacatcaaccatctgttttgaaacttgta 34720124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 39 - 232
Target Start/End: Original strand, 34715143 - 34715333
Alignment:
Q  39 tgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaac 138  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| | |||||| | |||||||||| |||||||||||    
T  34715143 tgaatctcattatcgtctctaaaaacataaattccagcattttgaagagaggtatagagatgtgaagtcaatctttcgcgagtatctttccctctgaaac 34715242  T
Q  139 tcaagaacacatcatagatcctttcctaaaatnnnnnnntaaagcaaattagcaaagcttgcgtactagctaaatacctggtatgctattaaca 232  Q
    |||||||||||||||||| |||||||| ||          |||| |||||| ||||||||| ||| ||||||||||||| ||||||||| ||||    
T  34715243 tcaagaacacatcatagaacctttcctgaa---gaaaaagaaagtaaattatcaaagcttgtgtagtagctaaatacctagtatgctatcaaca 34715333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 34729789 - 34729938
Alignment:
Q  21 gagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgag 120  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||| ||||| |||||||| |||||  |||||||| |||||||||||| |||||||||    
T  34729789 gagatctgatcacctcgttgaatctcatcatcatctctaaaaacataaattccagcattttcaagagctgtatagagatgtgaaatgaattttgcacgag 34729888  T
Q  121 tatcttcccctctgaaactcaagaacacatcatagatcctttcctaaaat 170  Q
    | || | ||||| |||||||||||| ||||| || |||||| ||||||||    
T  34729889 tgtcgttccctcggaaactcaagaagacatcgtaaatccttccctaaaat 34729938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 18925560 - 18925424
Alignment:
Q  12 agtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatc 111  Q
    |||||||  ||||||||||| ||||| |||||||||| || |||| | ||||||| ||| |  |||||||||||||| |||||||| ||||||||||||     
T  18925560 agtgagaatgagatctgatctcctcgttgaatctcatcattgtctttgaaaacatgaataccggcattttgaagagaagtatagagatgtgaaatgaatt 18925461  T
Q  112 ttgcacgagtatcttcccctctgaaactcaagaacac 148  Q
    ||||||||  ||||  |||||||||||||||||||||    
T  18925460 ttgcacgacaatctatccctctgaaactcaagaacac 18925424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 34734339 - 34734502
Alignment:
Q  7 gcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaat 106  Q
    |||||| ||| || |||| |||||||||||| |||||||||| |||| |||||||||||| ||||| |||||||| ||| |  |||||||| ||||||||    
T  34734339 gcaacaatgacactgagacctgatcacctcgttgaatctcatcatcgcctctaaaaacataaattccagcattttcaagggccgtatagagatgtgaaat 34734438  T
Q  107 gaatcttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctttcctaaaat 170  Q
    |||| ||||| |||| || || || | |||||||||||| ||||| || |||| | ||||||||    
T  34734439 gaattttgcatgagtgtcgtcgccccggaaactcaagaagacatcgtaaatccctccctaaaat 34734502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 6592217 - 6592370
Alignment:
Q  1 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttg 100  Q
    ||||||||||||||||||  ||||| ||||| ||||| |||||||| | ||||||||| ||||||| ||| |  |||||||||||||||| |||||| ||    
T  6592217 ttgctcgcaacagtgagattgagatatgatctcctcgttgaatctcgtcatcgtctctgaaaacataaatccccgcattttgaagagaggaatagagatg 6592316  T
Q  101 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcata 154  Q
    ||| |||||  |||| ||| | ||||| ||||||||||||||||||||||||||    
T  6592317 tgacatgaactttgcccgattgtcttctcctctgaaactcaagaacacatcata 6592370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 6833414 - 6833264
Alignment:
Q  1 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttg 100  Q
    ||||||||||||||||||  ||||||||||| ||||| |||||||| ||||||||| | ||| ||| ||| |   ||||||||||||||| | |||| ||    
T  6833414 ttgctcgcaacagtgagattgagatctgatctcctcgttgaatctcgttatcgtctttgaaagcatgaatcccttcattttgaagagaggaaaagagatg 6833315  T
Q  101 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 151  Q
    ||| |||||  |||||||| ||||||||||||||||||||||||| |||||    
T  6833314 tgacatgaactttgcacgactatcttcccctctgaaactcaagaatacatc 6833264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 6625848 - 6625998
Alignment:
Q  1 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttg 100  Q
    |||||||||| ||||| |  ||||||||||| ||||| ||||| ||||  |||||| | ||||||| ||| |  |||||||||||||| | |||||| ||    
T  6625848 ttgctcgcaatagtgaaattgagatctgatcgcctcgttgaatttcatcgtcgtctttgaaaacataaatcccggcattttgaagagatgaatagagatg 6625947  T
Q  101 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 151  Q
    |||||||||  |||||||| | |||||||||||||||||||||||||||||    
T  6625948 tgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatc 6625998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 6793463 - 6793310
Alignment:
Q  1 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttg 100  Q
    ||||||||||||||||||  ||||| ||||| ||||| |||||||||| ||||||| | ||||||| ||| |  ||||||||||| |||| |||||| ||    
T  6793463 ttgctcgcaacagtgagattgagatatgatctcctcgttgaatctcatcatcgtctttgaaaacatgaatccctgcattttgaagggaggaatagagatg 6793364  T
Q  101 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcata 154  Q
    ||| |  ||  |||| ||| | ||||||||||||||||||||||||||||||||    
T  6793363 tgacacaaactttgcccgattgtcttcccctctgaaactcaagaacacatcata 6793310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 6667231 - 6667102
Alignment:
Q  21 gagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgag 120  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||  || ||| |  |||||||||||||| | |||||| ||||| |||||  ||||||||     
T  6667231 gagatctgatcacctcgttgaatctcatcatcatctctgaaagtataaatacccgcattttgaagagaagaatagaggtgtgacatgaactttgcacgac 6667132  T
Q  121 tatcttcccctctgaaactcaagaacacat 150  Q
    | ||||||||||||||||||||||||||||    
T  6667131 tttcttcccctctgaaactcaagaacacat 6667102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 6716514 - 6716374
Alignment:
Q  11 cagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaat 110  Q
    ||||||||||||||| ||||| ||||| |||||| |||  |||||| | ||| ||| ||| |  ||| | |||||||||| || ||| ||||| |||||     
T  6716514 cagtgagaccgagatttgatctcctcgttgaatcccatcgtcgtctttgaaagcataaatccctgcactgtgaagagaggaatggagatgtgatatgaac 6716415  T
Q  111 cttgcacgagtatcttcccctctgaaactcaagaacacatc 151  Q
    |||| |||| | |||||||||||||||||||||||||||||    
T  6716414 cttggacgattgtcttcccctctgaaactcaagaacacatc 6716374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 7889685 - 7889821
Alignment:
Q  12 agtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatc 111  Q
    |||| ||| ||||||||||| ||||| |||||| ||| ||||||| | ||||||| ||  |  | ||||||||||||| |||| || ||||||||||||     
T  7889685 agtgcgactgagatctgatctcctcgttgaatcccatcatcgtctttgaaaacataaagcccggaattttgaagagagatatatagatgtgaaatgaatt 7889784  T
Q  112 ttgcacgagtatcttcccctctgaaactcaagaacac 148  Q
    |||| |||   ||||||||||||||||||||||||||    
T  7889785 ttgctcgacagtcttcccctctgaaactcaagaacac 7889821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 6648167 - 6648017
Alignment:
Q  1 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttg 100  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||| || ||| ||||| |||  || ||| |  |||||||| ||||| | | |||  ||    
T  6648167 ttgctcgcaacagtgagactgagatttgatctcctcgctgaatctgatcatcatctctgaaagtatgaatccctgcattttgcagagatgaaaagatatg 6648068  T
Q  101 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 151  Q
    ||| |||||  |||||||  | ||||||||||| |||||||||||||||||    
T  6648067 tgacatgaactttgcacggctgtcttcccctctaaaactcaagaacacatc 6648017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 21227252 - 21227102
Alignment:
Q  1 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttg 100  Q
    ||||| |||| |||||| | ||||||||||| ||||| |  ||| |||  |||||| | ||||||| ||| | ||||||| ||||||||| || ||| ||    
T  21227252 ttgcttgcaagagtgagcctgagatctgatctcctcgttctatcccatcgtcgtctttgaaaacataaatcccagcatttcgaagagaggaattgagatg 21227153  T
Q  101 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 151  Q
    |||||||||| |  || || | |||||||||||||||||||||||||||||    
T  21227152 tgaaatgaatttcacatgactttcttcccctctgaaactcaagaacacatc 21227102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 6549380 - 6549524
Alignment:
Q  1 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttg 100  Q
    ||||||| ||||||||||  || |||||||| ||||| |||||||    ||||||| | ||||||| ||| |  ||||||| |||||||| ||  || ||    
T  6549380 ttgctcgaaacagtgagattgatatctgatctcctcgttgaatcttgaaatcgtctttgaaaacatgaatccctgcattttcaagagaggaatgcagatg 6549479  T
Q  101 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaa 145  Q
    |||||||||| | |||||| |||||||||||| ||||||||||||    
T  6549480 tgaaatgaatttcgcacgactatcttcccctcggaaactcaagaa 6549524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 10034798 - 10034728
Alignment:
Q  83 aagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcat 153  Q
    |||||||| |||||| |||||||||||| | || ||| | |||||||||||||||||||||||||| ||||    
T  10034798 aagagaggaatagagatgtgaaatgaatttcgcgcgaatgtcttcccctctgaaactcaagaacacgtcat 10034728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 6749893 - 6749817
Alignment:
Q  75 gcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 151  Q
    |||||||||||||| | ||  || |||||||||||| |||||||| | || || |||||||||||||||||||||||    
T  6749893 gcattttgaagagaagaatgcagatgtgaaatgaattttgcacgactgtcgtctcctctgaaactcaagaacacatc 6749817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 4332567 - 4332495
Alignment:
Q  79 tttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 151  Q
    |||||||||| ||| |||| |||||| |||||  ||| ||||| ||||| ||||| |||||||||||||||||    
T  4332567 tttgaagagatgtagagagatgtgaagtgaatgatgcgcgagtgtcttcgcctctaaaactcaagaacacatc 4332495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 6770538 - 6770394
Alignment:
Q  1 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttg 100  Q
    ||||||||||||||| ||  || || || || ||||| |||| ||||| ||||||||||||| ||  |||    | |||||||||||||| |||||| ||    
T  6770538 ttgctcgcaacagtgcgattgatatatgctctcctcgttgaagctcatcatcgtctctaaaagcaaaaatagctgaattttgaagagaggaatagagatg 6770439  T
Q  101 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaa 145  Q
    |||||||||  | | |||| | ||| ||||||| |||||||||||    
T  6770438 tgaaatgaacttcgaacgattgtctacccctctaaaactcaagaa 6770394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 6537055 - 6537208
Alignment:
Q  1 ttgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttg 100  Q
    |||||||||||||||| |  ||||||||||| ||||| |  ||||| | ||||||| | ||||||| |||    | |||||||||||||| ||  |  ||    
T  6537055 ttgctcgcaacagtgatattgagatctgatctcctcgttcgatctcgtcatcgtctttgaaaacatgaatcgcggaattttgaagagaggaattcaaatg 6537154  T
Q  101 tgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcata 154  Q
    ||||| |||| |  ||||| | || |||||||| |||||||| |||||||||||    
T  6537155 tgaaacgaatttcacacgactgtcgtcccctctaaaactcaaaaacacatcata 6537208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 6501369 - 6501489
Alignment:
Q  28 gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc 127  Q
    |||| |||| ||||||||| | ||| ||||| |||  || |||||  |||||||||||||||||||| || ||||| |||||  ||| || |  |||||     
T  6501369 gatctcctctctgaatctcgtcatcatctctgaaagtataaattcctgcattttgaagagaggtataaagatgtgatatgaactttgtacaacaatcttt 6501468  T
Q  128 ccctctgaaactcaagaacac 148  Q
     || |||||||||||||||||    
T  6501469 tccgctgaaactcaagaacac 6501489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 6712689 - 6712613
Alignment:
Q  75 gcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 151  Q
    |||||||||||||| | ||  || ||||||| |||| |||||| |   || ||||||||||||||||||||||||||    
T  6712689 gcattttgaagagaagaatgcagatgtgaaacgaattttgcactaccgtcgtcccctctgaaactcaagaacacatc 6712613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 6812768 - 6812692
Alignment:
Q  75 gcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 151  Q
    |||||||||||||||| ||| |  || ||||||||| | |||||| | || |||||||| |||||||||| ||||||    
T  6812768 gcattttgaagagaggaatacaaatgggaaatgaatttcgcacgactgtcatcccctctaaaactcaagatcacatc 6812692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 5092881 - 5092784
Alignment:
Q  57 ctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcata 154  Q
    |||||||||||||||| |||||||||||| || | |||||| |||||| |||||  ||||||||||||||  ||||| ||||| |||||||| |||||    
T  5092881 ctaaaaacattaattccagcattttgaagtgaagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcata 5092784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 5149863 - 5149959
Alignment:
Q  57 ctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcat 153  Q
    |||||||| ||||||| ||||||||||||||| | |||||| |||||| |||||  ||| || |||||||||||||| ||||| |||||||| ||||    
T  5149863 ctaaaaactttaattccagcattttgaagagaagcatagagatgtgaagtgaatgatgcgcgcgtatcttcccctctaaaacttaagaacacttcat 5149959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 5444065 - 5443943
Alignment:
Q  39 tgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaac 138  Q
    |||| ||||||||||||| ||||||| ||||||| ||| ||||||||||  | ||| || |||||| ||||    ||||||||||||| |||||| ||||    
T  5444065 tgaagctcattatcgtctataaaaaccttaattccagccttttgaagagcagcatacagatgtgaagtgaaggaagcacgagtatctttccctctaaaac 5443966  T
Q  139 tcaagaacacatcatagatcctt 161  Q
    | |||||||| |||| |||||||    
T  5443965 ttaagaacacgtcatggatcctt 5443943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 5422126 - 5422042
Alignment:
Q  77 attttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctt 161  Q
    |||||||||||| | |||||| |||||| |||||  |||||||||||| || ||||| ||||| ||||||||||||| |||||||    
T  5422126 attttgaagagaagcatagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatggatcctt 5422042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 5264391 - 5264505
Alignment:
Q  39 tgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaac 138  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||||||||  | ||| || ||||||| |||    | ||||||||| || || |||||||    
T  5264391 tgaagctcattatcgtctctaaaaactttaattccagcattttgaagagctgcatatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaac 5264490  T
Q  139 tcaagaacacatcat 153  Q
    | |||||||| ||||    
T  5264491 ttaagaacacgtcat 5264505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 5429542 - 5429438
Alignment:
Q  57 ctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcataga 156  Q
    ||||||||| |||||| ||||||||||||||| | |||||| |||||| ||||   | | ||||||||||| ||||| ||||| | |||||| |||| ||    
T  5429542 ctaaaaacagtaattccagcattttgaagagaagcatagagatgtgaagtgaacgatcctcgagtatcttcgcctctaaaacttaggaacacgtcatgga 5429443  T
Q  157 tcctt 161  Q
    |||||    
T  5429442 tcctt 5429438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 5107934 - 5108045
Alignment:
Q  50 atcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacaca 149  Q
    ||||||||||||||| || |||| ||| || |||||||| | |||||| |||||| ||||    |||||||||||||  ||||||||||| | ||||||     
T  5107934 atcgtctctaaaaacgttgattccagcgttctgaagagaagcatagagatgtgaagtgaaggaagcacgagtatctttgcctctgaaacttaggaacacg 5108033  T
Q  150 tcatagatcctt 161  Q
    |||| |||||||    
T  5108034 tcatggatcctt 5108045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 5185076 - 5185121
Alignment:
Q  116 acgagtatcttcccctctgaaactcaagaacacatcatagatcctt 161  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||    
T  5185076 acgagtatcttcccctctaaaacttaagaacacatcatggatcctt 5185121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 5394305 - 5394196
Alignment:
Q  39 tgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaac 138  Q
    |||| ||||||||| ||||||||||| ||||||| |  ||||| |||||  | |||||| |||||| |||||   | |||||| || |||||||||||||    
T  5394305 tgaagctcattatcatctctaaaaaccttaattccaaaatttttaagagccgcatagagatgtgaagtgaatgaagaacgagtgtcctcccctctgaaac 5394206  T
Q  139 tcaagaacac 148  Q
    | ||||||||    
T  5394205 ttaagaacac 5394196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 5160652 - 5160756
Alignment:
Q  50 atcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacaca 149  Q
    |||||| |||||||| |||| || ||| |||||||| |  | |||||| |||||| |||||  ||||||||||||||  ||||| ||||| ||||||||     
T  5160652 atcgtccctaaaaacgttaagtccagcgttttgaagtgcagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacact 5160751  T
Q  150 tcata 154  Q
    |||||    
T  5160752 tcata 5160756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 5358315 - 5358399
Alignment:
Q  77 attttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctt 161  Q
    ||||||||| || | |||||| |||||| |||| |  ||| |||| || || ||||||||||||||||||||||||| |||||||    
T  5358315 attttgaagggaagcatagagatgtgaagtgaagcaagcatgagtgtcctctcctctgaaactcaagaacacatcatggatcctt 5358399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 5340504 - 5340401
Alignment:
Q  50 atcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacaca 149  Q
    |||||||||||||||| |||||| |||||||||||| |  | |||||| |||||| ||||   | ||||||| || | |||||| |||||||| |||||     
T  5340504 atcgtctctaaaaacagtaattccagcattttgaagtgcagcatagagatgtgaagtgaaggatacacgagtgtccttccctctaaaactcaaaaacact 5340405  T
Q  150 tcat 153  Q
    ||||    
T  5340404 tcat 5340401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 240 - 164
Alignment:
Q  75 gcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 151  Q
    |||||||||||||||| ||| |  || ||||||||| | |||||| | || |||||||| |||||||||| ||||||    
T  240 gcattttgaagagaggaatacaaatgggaaatgaatttcgcacgactgtcatcccctctaaaactcaagatcacatc 164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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