View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_high_18 (Length: 250)
Name: NF4215_high_18
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10655443 - 10655682
Alignment:
| Q |
1 |
ctgcatctataaaacacttaaataatactataaaacttgggtggtatttgtatttcttttcttaacaaaaaataacacatcatgtttgcaacattttatg |
100 |
Q |
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| T |
10655443 |
ctgcatctataaaacacttaaataatactataaaacttgggtggtatttgtatttcttttcttaacaaaaaataacacatcatgtttgcaacattttatg |
10655542 |
T |
|
| Q |
101 |
accagcatagcaataagattaaataaattgaacaaggtaataacattaaacattcttgagaaatttgaacatacctttcttccatctgatcctgtatacc |
200 |
Q |
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| T |
10655543 |
accagcatagcaataagattaaataaattgaacaaggtaataacattaaacattcttgagaaatttgaacatacctttcttccatctgatcctgtatacc |
10655642 |
T |
|
| Q |
201 |
aatgaccagctgattgatcgcttgcttgtacacgcctttg |
240 |
Q |
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| T |
10655643 |
aatgaccagctgattgatcgcttgcttgtacgcgcctttg |
10655682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 40437009 - 40437136
Alignment:
| Q |
113 |
ataagattaaataaattgaacaaggtaataacattaaacattcttgagaaatttg-aacatacctttcttccatctgatcctgtataccaatgaccagct |
211 |
Q |
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|||||| ||||||||| ||| | |||||||| | ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40437009 |
ataagagtaaataaatcaaaccacttaataacagttaacgttcttcagaaattttcaacatacctttcttccatctgatcctgtataccaatgaccagca |
40437108 |
T |
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| Q |
212 |
gattgatcgcttgcttgtacacgccttt |
239 |
Q |
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| T |
40437109 |
gattgactgcttgcttgtacacgccttt |
40437136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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