View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_high_20 (Length: 249)
Name: NF4215_high_20
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_high_20 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 139922 - 140151
Alignment:
| Q |
1 |
cttgttggttctgagattgataaccatttagcttttccttcgttatcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
139922 |
cttgttggttctgagattgataaccatttagcttttccttcgttagcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaa |
140021 |
T |
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| Q |
101 |
agaagagtaatagggtattcttgattgttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
200 |
Q |
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| T |
140022 |
agaagagtaatagggtattcttgattgttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
140121 |
T |
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| Q |
201 |
ggcgtggattatcccgaatggagttgctgg |
230 |
Q |
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|||||||||||||||||||| ||||||||| |
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| T |
140122 |
ggcgtggattatcccgaatgaagttgctgg |
140151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 148531 - 148760
Alignment:
| Q |
1 |
cttgttggttctgagattgataaccatttagcttttccttcgttatcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaa |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||| |||||| |
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| T |
148531 |
cttgttggttctgagattgatgaccatttagcttttccttcgttatcaacactttcagacccaaaatctacaattgaagaagagcttaataagctgaaaa |
148630 |
T |
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| Q |
101 |
agaagagtaatagggtattcttgattgttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
200 |
Q |
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| T |
148631 |
gaaagagtaatagggtattcttgattgttcattcttctttagagttggctaatattatttgtgagaaagcaaaacaaataggtttgatggaaaaaggttc |
148730 |
T |
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| Q |
201 |
ggcgtggattatcccgaatggagttgctgg |
230 |
Q |
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| T |
148731 |
ggcgtggattatcccaaatgaagttgctgg |
148760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24897247 - 24897476
Alignment:
| Q |
1 |
cttgttggttctgagattgataaccatttagcttttccttcgttatcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaa |
100 |
Q |
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|||||||||||||| ||||| | |||||||||||||||||| ||||| || |||||||| || |||||| |||||||| |||||||||| ||||||| |
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| T |
24897247 |
cttgttggttctgaaattgaaagccatttagcttttccttctttatccacactttcagacgcagaatctacaattgaaaatgagcttaataagttgaaaa |
24897346 |
T |
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| Q |
101 |
agaagagtaatagggtattcttgattgttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
200 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
24897347 |
ggaagagtaatagggtcttcttgattgttcgttcttctttagagttggctaatattatttgtgagaaagcaaaacaaataggtttgatggaaaaaggttc |
24897446 |
T |
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| Q |
201 |
ggcgtggattatcccgaatggagttgctgg |
230 |
Q |
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| T |
24897447 |
ggtgtggattatcccggatgaggttgctgg |
24897476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 24909350 - 24909565
Alignment:
| Q |
1 |
cttgttggttctgagattgataaccatttagcttttccttcgttatcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaa |
100 |
Q |
| |
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|||| ||||||||| ||||| | |||||||||| ||||||| ||||| || |||||||| || |||||| |||||||| |||||||||| ||||||| |
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| T |
24909350 |
cttgctggttctgaaattgaaagccatttagctattccttctttatccacactttcagacgcagaatctacaattgaaaatgagcttaataagttgaaaa |
24909449 |
T |
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| Q |
101 |
agaagagtaatagggtattcttgattgttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
200 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
24909450 |
ggaagagtaatagggtcttcttgattgttcgttcttctttagagttggctaatattatttgtgagaaagcaaaacaaataggtttgatggaaaaaggttc |
24909549 |
T |
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| Q |
201 |
ggcgtggattatcccg |
216 |
Q |
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|| |||||||||||| |
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| T |
24909550 |
ggtatggattatcccg |
24909565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 24986853 - 24987068
Alignment:
| Q |
1 |
cttgttggttctgagattgataaccatttagcttttccttcgttatcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaa |
100 |
Q |
| |
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|||| ||||||||| ||||| | |||||||||| ||||||| ||||| || |||||||| || |||||| |||||||| ||||||||| ||||||| |
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| T |
24986853 |
cttgctggttctgaaattgaaagccatttagctattccttctttatccacactttcagacgcagaatctacaattgaaaatgagcttaatgagttgaaaa |
24986952 |
T |
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| Q |
101 |
agaagagtaatagggtattcttgattgttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
200 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
24986953 |
ggaagagtaatagggtcttcttgattgttcgttcttctttagagttggctaatattatttgtgagaaagcaaaacaaataggtttgatggaaaaaggttc |
24987052 |
T |
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| Q |
201 |
ggcgtggattatcccg |
216 |
Q |
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|| ||||||||||||| |
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| T |
24987053 |
ggtgtggattatcccg |
24987068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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