View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_high_22 (Length: 246)
Name: NF4215_high_22
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_high_22 |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2802943 - 2803172
Alignment:
| Q |
1 |
gtgtgacaaataataaatcgtaattaacttaaatcttttcgacacatttctacctgttggatcatgagggaagtcgatcatccacattggtcccagaaca |
100 |
Q |
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| T |
2802943 |
gtgtgacaaataataaatcgtaattaacttaaatcttttcgacacatttctacctgttggatcacgagggaagtcaatcatccacattggtcccagaaca |
2803042 |
T |
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| Q |
101 |
accatataagtgagttgaacaccaaaatttaatccaaaacctttggtcaggatcacccttgaactcttcgtcgaaccacgactctgataccactgttggg |
200 |
Q |
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| T |
2803043 |
accatataagtgagttgaacaccaaactttaatccaaaacctttggtcaggatcacccttgaactcttcgtcgaaccacgactctgataccactgttggg |
2803142 |
T |
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| Q |
201 |
ccacgaggagagcccaggggatcaccattc |
230 |
Q |
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| T |
2803143 |
ccacgaggagagcccgggggatcaccattc |
2803172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 30313391 - 30313329
Alignment:
| Q |
161 |
gaactcttcgtcgaaccacgactctgataccactgttgggccacgaggagagcccaggggatc |
223 |
Q |
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| T |
30313391 |
gaactattcgtcaaaccacgactctgataccactgttgggtcacgaggagagcccgggggatc |
30313329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 30312991 - 30312939
Alignment:
| Q |
174 |
aaccacgactctgataccactgttgggccacgaggagagcccaggggatcacc |
226 |
Q |
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| T |
30312991 |
aaccacaactctgataccactgttgggtcacgaggggagctcgggggaccacc |
30312939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 9956118 - 9956063
Alignment:
| Q |
166 |
cttcgtcgaaccacgactctgataccactgttgggccacgaggagagcccagggga |
221 |
Q |
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| T |
9956118 |
cttcgtcgaaccgaggctctgataccactgttgggtcacgaggagagcctagggga |
9956063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 37170148 - 37170083
Alignment:
| Q |
77 |
atcatccacattggtcccagaacaaccatataagtgagttgaacaccaaaatttaatccaaaacct |
142 |
Q |
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| T |
37170148 |
atcatccacattgagccaagagaaaccacataagtgagttaaacaccatattttaatccaaaacct |
37170083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 9620622 - 9620682
Alignment:
| Q |
161 |
gaactcttcgtcgaaccacgactctgataccactgttgggccacgaggagagcccagggga |
221 |
Q |
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| T |
9620622 |
gaacccttcgtcgaaccacaactctgataccatcgttgggtcacgaggggagcccggggga |
9620682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 39336175 - 39336234
Alignment:
| Q |
161 |
gaactcttcgtcgaaccacgactctgataccactgttgggccacgaggagagcccagggg |
220 |
Q |
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| T |
39336175 |
gaacccttcgttgaaccacgactctgataccaatgttggatcacgaggggagccaagggg |
39336234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 39668 - 39615
Alignment:
| Q |
161 |
gaactcttcgtcgaaccacgactctgataccactgttgggccacgaggagagcc |
214 |
Q |
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| T |
39668 |
gaacccttcgtcgaacctcggctctgataccactgttgggtcactaggggagcc |
39615 |
T |
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