View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_high_25 (Length: 240)
Name: NF4215_high_25
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 46030980 - 46031186
Alignment:
| Q |
7 |
caacttgagactttttcagttttgaaatgcatccaaaaggttttatgcagaatataagtgtatatatagattatagagtaccttgctgacaaactagaaa |
106 |
Q |
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| T |
46030980 |
caacttgagactttttcagttttgaaatgcatccaaaaggttttatgcagaatataagtgtatatataaattatagagtaccttgctgacaaactagaaa |
46031079 |
T |
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| Q |
107 |
gtcagactgttgcagggcttgatcttgatcttgaccgtcatattgtgcattttgtacacttgtcaatgtctcctccaatccaagtgttgttgtatcaatt |
206 |
Q |
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| T |
46031080 |
gtcagactgttgcaggg------cttgatcttgaccgtcatattgtgcattttgtacacctgtcaatgtctcctccaatccaagtgttgttgtatcaatt |
46031173 |
T |
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| Q |
207 |
ggcaatggattcc |
219 |
Q |
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| T |
46031174 |
ggcaatggattcc |
46031186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 46018348 - 46018548
Alignment:
| Q |
1 |
cctatacaacttgagactttttcagttttgaaatgcatccaaaaggttttatgcagaatataagtgtatatatagattatagagtaccttgctgacaaac |
100 |
Q |
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| T |
46018348 |
cctagacaactcaagactttttcagttttgaaatgcatccaaaagtgtttatgcagaatataagtgtaca-------tatagagtaccttgctgagcaat |
46018440 |
T |
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| Q |
101 |
tagaaagtcagactgttgcagggcttgatcttgatcttgaccgtcatattgtgcattttgtacacttgtcaatgtctcctccaatccaagtgttgttgta |
200 |
Q |
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| T |
46018441 |
tggaaagtcaaacggttgccggg------cttgatcttgaccaccatattgtgcagtttgtacacttgatgatgtctccaccaaaccatgaattgttgta |
46018534 |
T |
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| Q |
201 |
tcaattggcaatgg |
214 |
Q |
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| T |
46018535 |
tcaattggcaatgg |
46018548 |
T |
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