View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_high_4 (Length: 506)
Name: NF4215_high_4
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 8964022 - 8964238
Alignment:
| Q |
12 |
agagatattactggatttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaatcgatggtaagtca |
111 |
Q |
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| T |
8964022 |
agagatattattgaatttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaatcgaaggcaagtca |
8964121 |
T |
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| Q |
112 |
ctgggtcactcagacttgaataagatatcgtcattttatgctagctcccacttgtttattgatgcaccgtcatatagttataccttgatttctaatgaaa |
211 |
Q |
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| T |
8964122 |
ctaggtcgctcagacttgaataaaatatcgtcattttatgctagctcccacttgtttattgatgcaccatcatgtagttataccttgatttctaatgaaa |
8964221 |
T |
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| Q |
212 |
tgttataagtttgttcc |
228 |
Q |
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||||||||||||||||| |
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| T |
8964222 |
tgttataagtttgttcc |
8964238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 264 - 490
Target Start/End: Original strand, 8964278 - 8964505
Alignment:
| Q |
264 |
aaggataaggttactatggttgaaatccaaatgcatggttagtggtggttaatggtnnnnnnnn-caagttttggaataatgtaagtactatatgagttt |
362 |
Q |
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| T |
8964278 |
aaggacaaggttactatggttcaaatccaaatgcatggttagtggtggttaatggtaaaaaaaaacaagtattggaataatgtaagtactatttgagttt |
8964377 |
T |
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| Q |
363 |
aatctttatgtgcaccttggaagaatacattactagtgcactttgttggaaaaaatatggtggcagattctttgaaacaagattaagaaagtttattggg |
462 |
Q |
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| T |
8964378 |
aatcttgatgtgcaccttggaagaagacattactagtgcactttgttggaaaaaatatggtggcagattctttgaaacaagattaagaaagtttattggg |
8964477 |
T |
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| Q |
463 |
cgagagatccatcttgtggatctttatg |
490 |
Q |
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| T |
8964478 |
cgagagatccatcttgtggatctttatg |
8964505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 358 - 490
Target Start/End: Complemental strand, 8956012 - 8955880
Alignment:
| Q |
358 |
agtttaatctttatgtgcaccttggaagaatacattactagtgcactttgttggaaaaaatatggtggcagattctttgaaacaagattaagaaagttta |
457 |
Q |
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| T |
8956012 |
agttaaatcttgatgtgcaccttggaagaatacattactagtgcactttgctggaaaaaatatggtggcaaattctttgaaacaagattaagaaagttta |
8955913 |
T |
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| Q |
458 |
ttgggcgagagatccatcttgtggatctttatg |
490 |
Q |
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| T |
8955912 |
ttgggcgagagatccatcttgtggatctttatg |
8955880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 8994863 - 8995058
Alignment:
| Q |
28 |
ttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaatcgatggtaagtcactgggtcactcagact |
127 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| || || |||||| ||||| || || || |
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| T |
8994863 |
ttggtagtattatgaatgtttgtgaattgttgtttaatgttaatattcaaaactctcatgtcgaatttaaacggaggcaagtcagtgggttgct-agtct |
8994961 |
T |
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| Q |
128 |
tgaataagatatcgtcattttatgctagctcccacttgtttattgatgcaccgtcatatagttataccttgatttctaatgaaatgttataagtttg |
224 |
Q |
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| ||| |||| |||||||||||||||| ||||||||||||||||| ||| |||| || || |||||||||||||||||||||||||| |||||| |
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| T |
8994962 |
tagcgaaggtatcatcattttatgctagcttccacttgtttattgatgtaccatcatgtatttgtaccttgatttctaatgaaatgttattagtttg |
8995058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 9019310 - 9019505
Alignment:
| Q |
28 |
ttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaatcgatggtaagtcactgggtcactcagact |
127 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| || || |||||| ||||| || || || |
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| T |
9019310 |
ttggtagtattatgaatgtttgtgaattgttgtttaatgttaatattcaaaactctcatgtcgaatttaaacggaggcaagtcagtgggttgct-agtct |
9019408 |
T |
|
| Q |
128 |
tgaataagatatcgtcattttatgctagctcccacttgtttattgatgcaccgtcatatagttataccttgatttctaatgaaatgttataagtttg |
224 |
Q |
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| ||| |||| |||||||||||||||| ||||||||||||||||| ||| |||| || || |||||||||||||||||||||||||| |||||| |
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| T |
9019409 |
tagcgaaggtatcatcattttatgctagcttccacttgtttattgatgtaccatcatgtatttgtaccttgatttctaatgaaatgttattagtttg |
9019505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 8991300 - 8991389
Alignment:
| Q |
8 |
gagcagagatattactggatttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaa |
97 |
Q |
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| T |
8991300 |
gagcagagacattactgaatttggtagcattatgaatgtttgtgaatagttattgaatgttagttttcaaaactatcatgtcgagtttaa |
8991389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 9015747 - 9015836
Alignment:
| Q |
8 |
gagcagagatattactggatttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaa |
97 |
Q |
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||||||||| ||||||| ||||||||| |||||||||||||||||| | || || ||||||| | ||||||||| | ||||||||||||| |
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| T |
9015747 |
gagcagagacattactgaatttggtagcattatgaatgtttgtgaatagttattgaatgttagttttcaaaactatcatgtcgagtttaa |
9015836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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