View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4215_low_10 (Length: 402)

Name: NF4215_low_10
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4215_low_10
NF4215_low_10
[»] chr3 (2 HSPs)
chr3 (1-163)||(14552971-14553133)
chr3 (345-386)||(14553188-14553229)
[»] chr5 (37 HSPs)
chr5 (5-163)||(37702286-37702444)
chr5 (225-383)||(37594282-37594440)
chr5 (225-383)||(37400922-37401080)
chr5 (225-383)||(37702626-37702784)
chr5 (26-163)||(37711128-37711265)
chr5 (5-162)||(37382726-37382883)
chr5 (8-163)||(37393276-37393431)
chr5 (224-383)||(37435664-37435823)
chr5 (5-120)||(37593807-37593922)
chr5 (8-163)||(37639352-37639507)
chr5 (5-120)||(37696198-37696313)
chr5 (8-120)||(37401440-37401552)
chr5 (8-120)||(37823510-37823622)
chr5 (5-120)||(37532703-37532818)
chr5 (225-383)||(37711582-37711740)
chr5 (5-162)||(37413565-37413722)
chr5 (18-159)||(37435326-37435467)
chr5 (225-380)||(37392939-37393094)
chr5 (225-383)||(37696673-37696837)
chr5 (225-383)||(37823847-37824011)
chr5 (315-383)||(37533148-37533216)
chr5 (161-219)||(37393187-37393245)
chr5 (162-219)||(37696523-37696580)
chr5 (160-216)||(37639537-37639593)
chr5 (160-216)||(37823695-37823751)
chr5 (166-216)||(37401176-37401226)
chr5 (162-216)||(37594132-37594186)
chr5 (163-216)||(37401311-37401364)
chr5 (163-216)||(37711298-37711351)
chr5 (164-219)||(37702478-37702533)
chr5 (171-216)||(37532902-37532947)
chr5 (229-383)||(37639828-37639988)
chr5 (162-216)||(37639674-37639728)
chr5 (162-216)||(37711432-37711486)
chr5 (303-383)||(37382379-37382459)
chr5 (171-219)||(37594006-37594054)
chr5 (171-219)||(37696397-37696445)
[»] chr4 (8 HSPs)
chr4 (229-383)||(16842920-16843074)
chr4 (5-120)||(16843438-16843553)
chr4 (5-160)||(24218133-24218288)
chr4 (9-120)||(16846106-16846217)
chr4 (171-219)||(16843171-16843219)
chr4 (166-216)||(16843309-16843359)
chr4 (171-219)||(16845970-16846018)
chr4 (167-219)||(24218041-24218093)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 14552971 - 14553133
Alignment:
Q  1 caatgactgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagagg 100  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14552971 caatgactgtggtagtggtcctttcaattggtttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagagg 14553070  T
Q  101 ttgttcatttgcatatccaaaatggagagaagaggaaatgtccccaggcattgtggaatcata 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14553071 ttgttcatttgcatatccaaaatagagagaagaggaaatgtccccaggcattgtggaatcata 14553133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 14553188 - 14553229
Alignment:
Q  345 aagataaatctaagttaacaaggttgggtaagatggagttag 386  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14553188 aagataaatctaagttaacaaggttgggtaagatggagttag 14553229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 37702286 - 37702444
Alignment:
Q  5 gactgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgt 104  Q
    ||||| |||| | ||||||  |||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||    
T  37702286 gactgcggtaatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatgcttccatagaggttgt 37702385  T
Q  105 tcatttgcatatccaaaatggagagaagaggaaatgtccccaggcattgtggaatcata 163  Q
    ||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||    
T  37702386 tcatttgcatatccaaaatagagagatgaggaaatgttcccagacattgtggaatcata 37702444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 225 - 383
Target Start/End: Original strand, 37594282 - 37594440
Alignment:
Q  225 atgagtttaagagcctcttttgaaaccatttaaggatttccccatgaattttgttattggatagatataatcttttcagattttgtgcttggaatttagg 324  Q
    |||||||||||||| |||| |||||||||||  | |||| ||||||||| ||||||||||| |||| ||||||||  |||||| ||| ||||||||||||    
T  37594282 atgagtttaagagcttcttatgaaaccatttgggaattttcccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttagg 37594381  T
Q  325 aaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||    
T  37594382 aaaactattaatattagaataagataaaactaagtcaacaaggttgggtaagatggagt 37594440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 225 - 383
Target Start/End: Complemental strand, 37401080 - 37400922
Alignment:
Q  225 atgagtttaagagcctcttttgaaaccatttaaggatttccccatgaattttgttattggatagatataatcttttcagattttgtgcttggaatttagg 324  Q
    |||||||||||||| |||| |||||||||||  | |||| |||| |||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  37401080 atgagtttaagagcttcttatgaaaccatttgggaattttcccacgaatgttgttattggagagatataatcttttcagatttcgtgctgggaatttagg 37400981  T
Q  325 aaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    ||||||||||||||||||| | |||||||||||   || ||||||||||||||||||||    
T  37400980 aaaactattaatattagcagaggataaatctaataaaaaaaggttgggtaagatggagt 37400922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 225 - 383
Target Start/End: Original strand, 37702626 - 37702784
Alignment:
Q  225 atgagtttaagagcctcttttgaaaccatttaaggatttccccatgaattttgttattggatagatataatcttttcagattttgtgcttggaatttagg 324  Q
    |||||||||||||  |||| |||||||||||  | |||| ||||||||| | ||||||||| |||| |||| ||| ||||||||||||||||||||||||    
T  37702626 atgagtttaagagtttcttatgaaaccatttgggaattttcccatgaatgtagttattggagagatctaatgtttgcagattttgtgcttggaatttagg 37702725  T
Q  325 aaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    ||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||    
T  37702726 aaaactattaatattagcagacgagaaatctaagtcaacaaggttgggtaagatggagt 37702784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 37711128 - 37711265
Alignment:
Q  26 aattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatgg 125  Q
    |||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||       
T  37711128 aattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaaaacat 37711227  T
Q  126 agagaagaggaaatgtccccaggcattgtggaatcata 163  Q
    |||||  ||||||||| || ||||||||||||||||||    
T  37711228 agagattaggaaatgttcctaggcattgtggaatcata 37711265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 37382883 - 37382726
Alignment:
Q  5 gactgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgt 104  Q
    |||||||||| | ||||||  ||| || |||||||||||||||| |||||||||||||||||||| || |||||||||||||||  ||||||||||||||    
T  37382883 gactgtggtaatggtccttccaatcggtttccattcaactttattgtctcaaatgcatttcctttggagaaggttctaggaatgtgtccatagaggttgt 37382784  T
Q  105 tcatttgcatatccaaaatggagagaagaggaaatgtccccaggcattgtggaatcat 162  Q
    |||||||||||||||| |  || |||  ||||||||| |||| |||||||||||||||    
T  37382783 tcatttgcatatccaataccgaaagagaaggaaatgttcccaagcattgtggaatcat 37382726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 37393431 - 37393276
Alignment:
Q  8 tgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttca 107  Q
    ||||||| | ||||||  |||||| |||||||||| |||||||||||||||  ||||||||| |||||||||| ||||||| ||||| ||||||||||||    
T  37393431 tgtggtaatggtccttccaattggtttccattcaattttatagtctcaaatatatttcctttggaaaaggttccaggaatgcttccacagaggttgttca 37393332  T
Q  108 tttgcatatccaaaatggagagaagaggaaatgtccccaggcattgtggaatcata 163  Q
    |||||||||||||||| ||||||  || |||||| || || |||||||||||||||    
T  37393331 tttgcatatccaaaatagagagataagaaaatgttcctagacattgtggaatcata 37393276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 383
Target Start/End: Original strand, 37435664 - 37435823
Alignment:
Q  224 aatgagtttaagagcctcttttgaaaccatttaaggatttccccatgaattttgttattggatagatataatcttttcagattttgtgcttggaatttag 323  Q
    |||| |||||||||| |||| |||||||||||  | |||| ||||||||| ||||||||||| |||| |||| |||  || |||||||| ||||||||||    
T  37435664 aatgtgtttaagagcttcttatgaaaccatttgggaattttcccatgaatgttgttattggagagatctaatgtttgaagtttttgtgcgtggaatttag 37435763  T
Q  324 gaaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    |||||||||||||||||||| |||||||||||||  |  |||||||||||||||||||||    
T  37435764 gaaaactattaatattagcagaagataaatctaacatctcaaggttgggtaagatggagt 37435823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 37593807 - 37593922
Alignment:
Q  5 gactgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgt 104  Q
    |||||||||| | ||||||  |||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  37593807 gactgtggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgt 37593906  T
Q  105 tcatttgcatatccaa 120  Q
    ||||||||||||||||    
T  37593907 tcatttgcatatccaa 37593922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 37639352 - 37639507
Alignment:
Q  8 tgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttca 107  Q
    ||||||| | ||||||  |||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  37639352 tgtggtaatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatgcttccatagaggttgttca 37639451  T
Q  108 tttgcatatccaaaatggagagaagaggaaatgtccccaggcattgtggaatcata 163  Q
    ||||||||||||| |  |  |||  ||  ||||| |||||||||||||||||||||    
T  37639452 tttgcatatccaatacagtaagagaagttaatgttcccaggcattgtggaatcata 37639507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 37696198 - 37696313
Alignment:
Q  5 gactgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgt 104  Q
    |||||||||| | ||||||  |||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  37696198 gactgtggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgt 37696297  T
Q  105 tcatttgcatatccaa 120  Q
    ||||||||||||||||    
T  37696298 tcatttgcatatccaa 37696313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 37401552 - 37401440
Alignment:
Q  8 tgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttca 107  Q
    ||||||| | ||||||  |||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||    
T  37401552 tgtggtaatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttca 37401453  T
Q  108 tttgcatatccaa 120  Q
    |||||||||||||    
T  37401452 tttgcatatccaa 37401440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 37823510 - 37823622
Alignment:
Q  8 tgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttca 107  Q
    ||||||| | ||||||  |||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||    
T  37823510 tgtggtaatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttca 37823609  T
Q  108 tttgcatatccaa 120  Q
    |||||||||||||    
T  37823610 tttgcatatccaa 37823622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 37532703 - 37532818
Alignment:
Q  5 gactgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgt 104  Q
    ||||| |||| | ||||||  |||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  37532703 gactggggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgt 37532802  T
Q  105 tcatttgcatatccaa 120  Q
    ||||||||||||||||    
T  37532803 tcatttgcatatccaa 37532818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 225 - 383
Target Start/End: Original strand, 37711582 - 37711740
Alignment:
Q  225 atgagtttaagagcctcttttgaaaccatttaaggatttccccatgaattttgttattggatagatataatcttttcagattttgtgcttggaatttagg 324  Q
    |||||||||||||| || | |||||||||||  | |||| ||||||||| ||||| ||||| |||| |||| ||| ||||||| ||||||||||||||||    
T  37711582 atgagtttaagagcttcgtatgaaaccatttgggaattttcccatgaatgttgttgttggagagatctaatgtttgcagatttcgtgcttggaatttagg 37711681  T
Q  325 aaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    ||||||||||||||||||| | |||||||||||   || ||||||||||| ||||||||    
T  37711682 aaaactattaatattagcagaggataaatctaatgaaaaaaggttgggtatgatggagt 37711740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 37413722 - 37413565
Alignment:
Q  5 gactgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgt 104  Q
    |||||||||| | ||||||  |||||  |||| |||||||||||  ||||||||| ||||||||| |||||||||||||||| | ||||||| | |||||    
T  37413722 gactgtggtaatggtccttccaattgatttccgttcaactttatcatctcaaatgtatttcctttggaaaaggttctaggaaagcttccatacaagttgt 37413623  T
Q  105 tcatttgcatatccaaaatggagagaagaggaaatgtccccaggcattgtggaatcat 162  Q
    |||||||||||||||| || || |||  ||||||||| || |||||||||||||||||    
T  37413622 tcatttgcatatccaatatagaaagagaaggaaatgttcctaggcattgtggaatcat 37413565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 37435326 - 37435467
Alignment:
Q  18 gtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatc 117  Q
    |||||| ||||||| | |||||||||||||||||||| || ||||||||| | ||||| ||| |||| ||| ||||||  ||||||||||||||||||||    
T  37435326 gtccttctaattggttgccattcaactttatagtctcgaaggcatttcctctggaaaaagttttaggcatgcttccattaaggttgttcatttgcatatc 37435425  T
Q  118 caaaatggagagaagaggaaatgtccccaggcattgtggaat 159  Q
    ||||| ||| |||| ||||||||| |||||||||| ||||||    
T  37435426 caaaacggaaagaaaaggaaatgttcccaggcattttggaat 37435467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 225 - 380
Target Start/End: Complemental strand, 37393094 - 37392939
Alignment:
Q  225 atgagtttaagagcctcttttgaaaccatttaaggatttccccatgaattttgttattggatagatataatcttttcagattttgtgcttggaatttagg 324  Q
    |||||||||||||| |||| |||||||||||  | |||  | ||||||| ||| ||||||| |||| ||| |||| ||||||| ||||||||||||||||    
T  37393094 atgagtttaagagcttcttatgaaaccatttgggaattctcgcatgaatgttgctattggagagatctaagctttccagatttcgtgcttggaatttagg 37392995  T
Q  325 aaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatgg 380  Q
    ||||||||||||||| ||||| |||||||||||   || |||||| ||||||||||    
T  37392994 aaaactattaatattggcatatgataaatctaatgaaaaaaggttaggtaagatgg 37392939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 225 - 383
Target Start/End: Original strand, 37696673 - 37696837
Alignment:
Q  225 atgagtttaagagcctcttttgaaaccatttaaggatttccccatgaattttgttattggatagatataatcttttcagattttgt------gcttggaa 318  Q
    |||||||||||||| |||| |||||||||||  | |||| ||||||||| ||||| ||||| |||| |||   || ||||||| ||      ||| ||||    
T  37696673 atgagtttaagagcttcttatgaaaccatttgggaattttcccatgaatgttgttgttggagagatctaacgattgcagatttggtagttgcgctaggaa 37696772  T
Q  319 tttaggaaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||    
T  37696773 tttaggaaaactattaatattagcattagataattctaagtcaacaaggttgggtaagatggagt 37696837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 225 - 383
Target Start/End: Original strand, 37823847 - 37824011
Alignment:
Q  225 atgagtttaagagcctcttttgaaaccatttaaggatttccccatgaattttgttattggatagatataatcttttcagattttgt------gcttggaa 318  Q
    |||||||||||||| |||| |||||||||||  | |||| ||||||||| ||||| ||||| |||| ||||  || ||||||| ||      ||| ||||    
T  37823847 atgagtttaagagcttcttatgaaaccatttgggaattttcccatgaatgttgttgttggagagatctaatgattgcagatttggtagttgcgctaggaa 37823946  T
Q  319 tttaggaaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    ||||||||||||||||||||||||| | |||||||||||   || ||||||||||||||||||||    
T  37823947 tttaggaaaactattaatattagcagaggataaatctaatgaaaaaaggttgggtaagatggagt 37824011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 37533148 - 37533216
Alignment:
Q  315 ggaatttaggaaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||    
T  37533148 ggaatttaggaaaactattaatattagcattagataattctaagtcaacaaggttgggtaagatggagt 37533216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 37393245 - 37393187
Alignment:
Q  161 atataaagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtt 219  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  37393245 atataaagggaactagcattgcagaatgttgaagaaatatctcctgtgaagttgttgtt 37393187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 37696523 - 37696580
Alignment:
Q  162 tataaagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtt 219  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  37696523 tataaagggaacttgcattgcagaatgttgaagaaatatttcctgtgaagttgttgtt 37696580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 37639537 - 37639593
Alignment:
Q  160 catataaagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgtt 216  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  37639537 catataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgtt 37639593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 37823695 - 37823751
Alignment:
Q  160 catataaagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgtt 216  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  37823695 catataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgtt 37823751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 37401226 - 37401176
Alignment:
Q  166 aagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgtt 216  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37401226 aagggaacttgcattgcagaatgttgaagaaatgtatcctgtgaagttgtt 37401176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 37594132 - 37594186
Alignment:
Q  162 tataaagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgtt 216  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  37594132 tataaagggaacttgcattgcagaatgttgaagaaatatttcctgtgaagttgtt 37594186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 37401364 - 37401311
Alignment:
Q  163 ataaagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgtt 216  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  37401364 ataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgtt 37401311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 37711298 - 37711351
Alignment:
Q  163 ataaagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgtt 216  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  37711298 ataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgtt 37711351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 37702478 - 37702533
Alignment:
Q  164 taaagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtt 219  Q
    |||||||||||||||||||||||||||||||| || | ||||||||||||||||||    
T  37702478 taaagggaacttgcattgcagaatgttgaagagatatttcctgtgaagttgttgtt 37702533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 37532902 - 37532947
Alignment:
Q  171 aacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgtt 216  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  37532902 aacttgcattgcagaatgttgaagaaatatctcctgtgaagttgtt 37532947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 383
Target Start/End: Original strand, 37639828 - 37639988
Alignment:
Q  229 gtttaagagcctcttttgaaaccatttaaggatttccccatgaattttgttattggatagatataatcttttcagattttgt------gcttggaattta 322  Q
    |||||||||| |||| |||||||||||  | |||| ||||||||| ||||||||||| |||| ||| | || || ||| |||      ||| |||||||     
T  37639828 gtttaagagcttcttatgaaaccatttgggaattttcccatgaatgttgttattggagagatctaaccattgcaaattatgtactcgtgctaggaatttg 37639927  T
Q  323 ggaaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    |||||||| |||||||||||| ||||||||| |||     |||||||||||||||||||||    
T  37639928 ggaaaacttttaatattagcagaagataaatataatgattcaaggttgggtaagatggagt 37639988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 37639674 - 37639728
Alignment:
Q  162 tataaagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgtt 216  Q
    |||||||||||||||| |||| ||||||||||||||| | |||||||||||||||    
T  37639674 tataaagggaacttgcgttgcggaatgttgaagaaatatttcctgtgaagttgtt 37639728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 37711432 - 37711486
Alignment:
Q  162 tataaagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgtt 216  Q
    |||||||||||||||| |||| ||||||||||||||| | |||||||||||||||    
T  37711432 tataaagggaacttgcgttgcggaatgttgaagaaatatttcctgtgaagttgtt 37711486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 37382459 - 37382379
Alignment:
Q  303 gattttgtgcttggaatttaggaaaactattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    |||||||||||  |||||||||||||||| ||||||||  | ||||||||| |||  |  |||||||||||||||||||||    
T  37382459 gattttgtgctaagaatttaggaaaactactaatattactagaagataaatataatatcccaaggttgggtaagatggagt 37382379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 37594006 - 37594054
Alignment:
Q  171 aacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtt 219  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||||||    
T  37594006 aacttgcattgcagaatgttgaagatatatctcctgtgaaattgttgtt 37594054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 37696397 - 37696445
Alignment:
Q  171 aacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtt 219  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||||||    
T  37696397 aacttgcattgcagaatgttgaagatatatctcctgtgaaattgttgtt 37696445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 229 - 383
Target Start/End: Complemental strand, 16843074 - 16842920
Alignment:
Q  229 gtttaagagcctcttttgaaaccatttaaggatttccccatgaattttgttattggatagatataatcttttcagattttgtgcttggaatttaggaaaa 328  Q
    |||||||||| |||| |||||||||||  | ||||  |||||||| ||||||||||| |||| ||||||||  |||||| ||| ||||||||||||||||    
T  16843074 gtttaagagcttcttatgaaaccatttgggaattttaccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaa 16842975  T
Q  329 ctattaatattagcataagataaatctaagttaacaaggttgggtaagatggagt 383  Q
    |||||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  16842974 ctattaatattagcataagataaatctaatgaaaaaaggttgggtaagatggagt 16842920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 16843553 - 16843438
Alignment:
Q  5 gactgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgt 104  Q
    |||||||||| | ||||||  |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  16843553 gactgtggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcatttcctttggaaaaggttttaggaatgcttccatagaggttgt 16843454  T
Q  105 tcatttgcatatccaa 120  Q
    ||||||||||||||||    
T  16843453 tcatttgcatatccaa 16843438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 24218288 - 24218133
Alignment:
Q  5 gactgtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgt 104  Q
    |||||||||| | |||| |  |||||| | |||||||||||||||||||| |||||||||||||  ||||| ||| |||| ||| |||||||||||||||    
T  24218288 gactgtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgt 24218189  T
Q  105 tcatttgcatatccaaaatggagagaagaggaaatgtccccaggcattgtggaatc 160  Q
    |||||||||||||||| |  || |||  ||||||||| ||||||||||||||||||    
T  24218188 tcatttgcatatccaatacagaaagataaggaaatgttcccaggcattgtggaatc 24218133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 16846217 - 16846106
Alignment:
Q  9 gtggtagttgtccttttaattgggttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcat 108  Q
    |||||| | ||||||  |||||| | |||||||||||||||||  ||||  |||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  16846217 gtggtaatggtccttccaattggttgccattcaactttatagtgacaaacacatttcctttggaaaaggttctaggaatgcttccaaagaggttgttcat 16846118  T
Q  109 ttgcatatccaa 120  Q
    ||||||||||||    
T  16846117 ttgcatatccaa 16846106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 16843219 - 16843171
Alignment:
Q  171 aacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16843219 aacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtt 16843171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 16843359 - 16843309
Alignment:
Q  166 aagggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgtt 216  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  16843359 aagggtacttgcattgcagaatgttgaagaaatatctcctgtgaagttgtt 16843309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 16846018 - 16845970
Alignment:
Q  171 aacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtt 219  Q
    |||||||| |||||||||| ||||| || ||| ||||||||||||||||    
T  16846018 aacttgcactgcagaatgtggaagacatatcttctgtgaagttgttgtt 16845970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 24218093 - 24218041
Alignment:
Q  167 agggaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtt 219  Q
    ||||||||||||||||| | ||   ||| ||||||||||||||||||||||||    
T  24218093 agggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtt 24218041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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