View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_11 (Length: 400)
Name: NF4215_low_11
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 395
Target Start/End: Complemental strand, 4121564 - 4121161
Alignment:
| Q |
5 |
cttcttcccgactgcagctggaatatattcgtcggccacatgtgtttcctttcttgataataaattttta-------------aaattttaactttgatc |
91 |
Q |
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| T |
4121564 |
cttcttcccgactgcagctggactatattcgttggccacaggtttttcctttcttgataataaatttttatattgaatttttaaaattttaactttgatc |
4121465 |
T |
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| Q |
92 |
gttatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccattgcagatgtacacatccttatcatatcaccaaat |
191 |
Q |
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| T |
4121464 |
gttatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccattgcagatgtacacatccttatcatatcaccaaat |
4121365 |
T |
|
| Q |
192 |
ttttgaattgtactccgtgactgcgattgtagccacaatgtcagagtttgggaccaccacatcacaacaattgcaattgtgtggcatcaactacattttt |
291 |
Q |
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| T |
4121364 |
ttttgaattgtactccgtgactgcgattgtagccacaatgtcagagtttgggaccaccacatcacaacaattgcaattgtgtggcatcaactacattttt |
4121265 |
T |
|
| Q |
292 |
ccacaattttcctcaatatcaaagatcaggtgttattgctagttggcagtcttgtgactgcccccacaatttcaaaccttcgcgtctctgcacaggttct |
391 |
Q |
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| T |
4121264 |
ccacaattttcctcaatatcaaagatcaggtgttattgctagttggcagtcttgtgactgcccccacaatttcaaaccttcacgtctctgctcaggttgt |
4121165 |
T |
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| Q |
392 |
gctc |
395 |
Q |
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| T |
4121164 |
gctc |
4121161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 318
Target Start/End: Original strand, 4363879 - 4364075
Alignment:
| Q |
128 |
aaacattgaagagaaagaatcattatccattgcagatgtacacatccttatcatatcaccaaatttttgaattgtactccgtgactgcgattgtagccac |
227 |
Q |
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| T |
4363879 |
aaacattgaagggaaagaaccattgtccattgcagatatatgtatccttatcagatgaccaaagttttaaattgtaatcctcgacttcaattgtagcctc |
4363978 |
T |
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| Q |
228 |
aatgtca--gagtttgggacc----accacatcacaacaattgcaattgtgtggcatcaactacatttttccacaattttcctcaatatcaaagatc |
318 |
Q |
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| T |
4363979 |
aatatcaaggattttgagaccactgaccacatcacaacaatcacaattgtgtcgcatcaacctcatttttcttcagttttccttaacatcaaagatc |
4364075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 4131359 - 4131230
Alignment:
| Q |
77 |
attttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaa---acattgaagagaaagaatcattatccattgcagatgtacacatc |
173 |
Q |
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|||| |||||| ||| || ||||||||||||||| |||||||||| ||| || |||||||||| |||||||||||||||||||||||||| ||| |
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| T |
4131359 |
atttgaactttcatcattttctgcagtaaatttgactttttaaaacctgctaataaacattgaagaaaaagaatcattatccattgcagatgtgtggatc |
4131260 |
T |
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| Q |
174 |
cttatcatatcaccaaatttttgaattgta |
203 |
Q |
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||| ||||| |||||| |||| ||||||| |
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| T |
4131259 |
cttggcatattaccaaagttttaaattgta |
4131230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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