View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4215_low_12 (Length: 381)

Name: NF4215_low_12
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4215_low_12
NF4215_low_12
[»] chr1 (2 HSPs)
chr1 (18-286)||(1394060-1394328)
chr1 (303-376)||(1391283-1391356)
[»] chr5 (4 HSPs)
chr5 (18-286)||(137304-137570)
chr5 (18-286)||(21300836-21301091)
chr5 (18-260)||(40461794-40462032)
chr5 (208-260)||(40378768-40378819)
[»] chr4 (2 HSPs)
chr4 (18-271)||(35185454-35185708)
chr4 (18-284)||(4104311-4104562)
[»] chr6 (4 HSPs)
chr6 (48-257)||(12354182-12354393)
chr6 (18-262)||(14963653-14963909)
chr6 (18-91)||(12354094-12354167)
chr6 (18-138)||(11648119-11648238)
[»] chr8 (5 HSPs)
chr8 (18-286)||(14979617-14979871)
chr8 (18-286)||(15334062-15334343)
chr8 (18-286)||(15514431-15514712)
chr8 (18-262)||(18803024-18803282)
chr8 (18-286)||(15423158-15423406)
[»] scaffold0464 (1 HSPs)
scaffold0464 (18-286)||(3850-4102)
[»] chr7 (1 HSPs)
chr7 (18-286)||(48631190-48631443)
[»] chr3 (1 HSPs)
chr3 (134-170)||(7490691-7490727)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 1394328 - 1394060
Alignment:
Q  18 aacttaactaaaacaaaagatatagcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaagt 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1394328 aacttaactaaaaccaaagatatagcaccaagtttaaacattcaaaaaaccgaaacactagtgactgaacattcaaaacaactgtagcaaaattagaagt 1394229  T
Q  118 ccataaactatctaaatattccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatctcttgtttctaaattt 217  Q
    ||||||||||||||||||||||||  || |||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||    
T  1394228 ccataaactatctaaatattccctggtggtgttgctttaatgatcctcgaggcggtagctagactcctatgaatgtctaccatctcttgtttctaaattt 1394129  T
Q  218 gttggctgaaaagaagaagaaaaataaataagacaatgattagtaaattgaaacacaatattgaaactg 286  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1394128 gttggctgaaaacaagaagaaaaataaataagacaatgattagtaaattgaaacacaatattgaaactg 1394060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 1391356 - 1391283
Alignment:
Q  303 tttcgacattctagaaatacaaatgaaataaaactcatatttcattaattcccaaccatctaaaatcatacttc 376  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1391356 tttcgactttctagaaatacaaatgaaataaaactcacatttcattaattcccaaccatctaaaatcatacttc 1391283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 137570 - 137304
Alignment:
Q  18 aacttaactaaaacaaaagatatagcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaagt 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||| |||||||||||||||||||| ||||||||||||| |||     
T  137570 aacttaactaaaacaaaagatatagcaccaaatttaaacattcaaaaaatcgaaacactaatgactgaacattcaaaacaactgtagcaaaattataag- 137472  T
Q  118 ccataaactatctaaatattccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatctcttgtttctaaattt 217  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | || ||||||||| |||||||||||||||||||    
T  137471 ccataaaatatctaaatattccctaatgatgttgcttcaatgatcctcgaggcggtagctagacttcgatgaatgtctaccatctcttgtttctaaattt 137372  T
Q  218 gttggctgaaaagaagaagaaaaataaataagacaatgattagtaaattgaaacacaatattgaaactg 286  Q
    ||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  137371 gttggttg-aatgaagaagaaaaataaagaagacaatgattagtaaattgaaacacaatattgaaactg 137304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 21300836 - 21301091
Alignment:
Q  18 aacttaactaaaacaaaagatatagca--ccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaa 115  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||||||||  ||||||||||||||||||||||||||||  ||||||||||||||||    
T  21300836 aacttaactaaaacaaaagatatataataccaagtttaaacattcaaaaaaca-aaacactagtgactgaacattcaaaacagctgtagcaaaattagaa 21300934  T
Q  116 gtccataaactatctaaatattccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatctcttgtttctaaat 215  Q
    ||                   |||||| |||||||||||||||||||||| ||||||| || ||||||  || ||||||||| |||||||||||||||||    
T  21300935 gt-------------------tccctagtgatgttgcttcaatgatcctccaggcggtggctagactcagatgaatgtctaccatctcttgtttctaaat 21301015  T
Q  216 ttgttggctgaa---aagaagaagaaaaataaataagacaatgattagtaaattgaaa--cacaatattgaaactg 286  Q
    ||||||||||||   |||||||||||| | ||| |||||| |||||||||||||||||  || |||||||||||||    
T  21301016 ttgttggctgaaaagaagaagaagaaagaaaaaaaagacagtgattagtaaattgaaacgcaaaatattgaaactg 21301091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 40461794 - 40462032
Alignment:
Q  18 aacttaactaaaacaaaagatatagcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaagt 117  Q
    ||||||| |||||||| ||||| || |   |||||||||||||||||| | ||||||||||||   ||||||| |||||| ||     ||||| ||| ||    
T  40461794 aacttaattaaaacaatagataaagtatgtagtttaaacattcaaaaatc-gaaacactagtggtcgaacatttaaaacattt-----aaaataagatgt 40461887  T
Q  118 ccataaactatctaaatattccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatctcttgtt---tctaaa 214  Q
    | ||||| ||||||| ||||  ||| ||||||||||||||||||||||||||   || |  |||||  || ||| | ||| ||||||||||   ||||||    
T  40461888 ctataaaatatctaagtattttctagtgatgttgcttcaatgatcctcaaggaaatatcttgactcggatgaatatttaccatctcttgttgattctaaa 40461987  T
Q  215 tttgttggctgaaaagaagaagaaaaataaataagacaatgattag 260  Q
    ||||||||||| |||||||||  ||||||||||||| |||||||||    
T  40461988 tttgttggctggaaagaagaa-taaaataaataagataatgattag 40462032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 40378819 - 40378768
Alignment:
Q  208 ttctaaatttgttggctgaaaagaagaagaaaaataaataagacaatgattag 260  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  40378819 ttctaaatttgttggctggaaagaagaa-aaaaataagtaagacaatgattag 40378768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 35185708 - 35185454
Alignment:
Q  18 aacttaactaaaacaaaagatatagcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaagt 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  35185708 aacttaactaaaacaaaagatatatcaccaagtttaaacattcaaaaaaccgaaacactagtgactgaacattcaaaacagctgtagcaaaattaaaagt 35185609  T
Q  118 ccataaactatctaaatattccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatct-cttgtttctaaatt 216  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||| || |||||||||| ||||||| || |||| |||| |||| ||| ||||||||||    
T  35185608 ccataaaatatctaaatattccctagtgatgttgcttcgatgatcatcgaggcggtagctagactccgatgaatgcctaccatctccttttttctaaatt 35185509  T
Q  217 tgttggctgaaaagaagaagaaaaataaataagacaatgattagtaaattgaaac 271  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  35185508 tgttggctgaaaagaagaagaaaaataaacaagacagtgattagtaaattgaaac 35185454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 4104562 - 4104311
Alignment:
Q  18 aacttaactaaaacaaaagatata--gcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaa 115  Q
    |||||| |||||||||||||||||  |  ||||||||||||||||||||| |  ||||||||||||||||||||||||||||  ||||||||||||||||    
T  4104562 aacttatctaaaacaaaagatatatagtcccaagtttaaacattcaaaaatca-aaacactagtgactgaacattcaaaacagctgtagcaaaattagaa 4104464  T
Q  116 gtccataaactatctaaatattccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatctcttgtttctaaat 215  Q
    ||                   || ||| |||||||||||||||||||||||||||||| || ||||||  || ||||||||| |||||||||||||||||    
T  4104463 gt-------------------tctctagtgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatctcttgtttctaaat 4104383  T
Q  216 ttgttggctgaaaagaagaagaa-aaataaataagacaatgattagtaaattgaaa--cacaatattgaaac 284  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||  || |||||||||||    
T  4104382 ttgttggctgaaaagaagaagaagaaaaaaataagacagtgattagtaaattgaaatgcaaaatattgaaac 4104311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 48 - 257
Target Start/End: Original strand, 12354182 - 12354393
Alignment:
Q  48 agtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaagtccataaactatctaaatattccctaatgat 147  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||| ||||||    
T  12354182 agtttaaacattcaaaaaaccgaaacactagtgactaaacattcaaaacaactgtaccaaaattagaaatccataaaatatctaaatattccccaatgat 12354281  T
Q  148 gttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatctc---ttgtttctaaatttgttggctgaaaagaagaagaaaaataa 244  Q
    |||||||||||||||||||| |||||||| | |||| ||| ||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||    
T  12354282 gttgcttcaatgatcctcaacgcggtagctaaactcatatgaatgtctac-atctcttgttgtttctaaatttgttggctgaaaagaagaagaaaaataa 12354380  T
Q  245 ataagacaatgat 257  Q
    |||||||||||||    
T  12354381 ataagacaatgat 12354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 14963909 - 14963653
Alignment:
Q  18 aacttaactaaaacaaaagatata--gcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaa 115  Q
    |||||||||||||||||| |||||  |  ||||||||||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  14963909 aacttaactaaaacaaaatatatacagtgccaagtttaaacatttaaaaaac-gaaacactagtgactgaacattcaaaacagctgtagcaaaattagaa 14963811  T
Q  116 gtccataaac---------tatctaaata-----ttccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatc 201  Q
    |||||||||          || | ||||      ||||||| ||||||||||||| ||||| |||||||||| || ||||||  || ||||||||| |||    
T  14963810 gtccataaaaaaacagctgtagcaaaattagaagttccctagtgatgttgcttcagtgatcatcaaggcggtggctagactcagatgaatgtctaccatc 14963711  T
Q  202 tcttgtttctaaatttgttggctgaaaagaagaagaaaaataaataagacaatgattagta 262  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||||| |||||||||||    
T  14963710 tcttgtttctaaatttgttggctgaaaagaag--gaaaaa-aaataagataatgattagta 14963653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 12354094 - 12354167
Alignment:
Q  18 aacttaactaaaacaaaagatatagcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattc 91  Q
    |||||||||||||||||||||| || ||| |||||||| |||  ||||||||||||||||| | ||||||||||    
T  12354094 aacttaactaaaacaaaagataaagtacctagtttaaatattttaaaaactgaaacactagcggctgaacattc 12354167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 11648119 - 11648238
Alignment:
Q  18 aacttaactaaaacaaaagatatagcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaagt 117  Q
    |||||||||||||| | ||||| |  || ||||||||||||||||||| |  ||||||||||  ||||| |||||||| ||||||| || |||||||| |    
T  11648119 aacttaactaaaacgatagataaaatacgaagtttaaacattcaaaaacca-aaacactagtagctgaatattcaaaataattgtatcataattagaaat 11648217  T
Q  118 ccataaactatctaaatattc 138  Q
    | ||| | |||||||||||||    
T  11648218 ctatagaatatctaaatattc 11648238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 14979617 - 14979871
Alignment:
Q  18 aacttaactaaaacaaaagatata--gcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaa 115  Q
    ||||||||||||||||||||||||  |   |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  14979617 aacttaactaaaacaaaagatatatagtgtcaagtttaaacattcaaaaaac-gaaacactagtgactgaacattcaaaacagttgtagcaaaattagaa 14979715  T
Q  116 gtccataaactatctaaatattccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatctcttgtttctaaat 215  Q
    ||                   ||||||||||||||||||||||||||||||||||||| || ||||||  || ||||||||| |||||||||||||||||    
T  14979716 gt-------------------tccctaatgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatctcttgtttctaaat 14979796  T
Q  216 ttgttggctgaaaagaagaaga--aaaataaataagacaatgattagtaaattgaaa--cacaatattgaaactg 286  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||  || |||||||||||||    
T  14979797 ttgttggctgaaaagaagaagaagaaaaaaaataagacaatgattagtaaattgaaatgcaaaatattgaaactg 14979871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 15334343 - 15334062
Alignment:
Q  18 aacttaactaaaacaaaagatat--agcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaa 115  Q
    |||||||||||||||||| ||||  ||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  15334343 aacttaactaaaacaaaatatatgcagtgccaagtttaaacattcaaaaaac-gaaacactagtgactgaacattcaaaacagctgtagcaaaattagaa 15334245  T
Q  116 gtccataa----ac-----tatctaaata-----ttccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatc 201  Q
    ||||||||    ||     || | ||||      ||||||| |||||||||||||||||||||||||||||| || ||||||  || ||||||||| |||    
T  15334244 gtccataacaaaacagctgtagcaaaattagaagttccctagtgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatc 15334145  T
Q  202 tcttgtttctaaatttgttggctgaaaagaagaagaaaaataaataagacaatgattagtaaattgaaa--cacaatattgaaactg 286  Q
    ||||||||||||||||||||||||||||||||    |||| ||| |||| ||||| |||||||||||||  || |||||||||||||    
T  15334144 tcttgtttctaaatttgttggctgaaaagaag----aaaaaaaaaaagataatgagtagtaaattgaaacgcaaaatattgaaactg 15334062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 15514712 - 15514431
Alignment:
Q  18 aacttaactaaaacaaaagatat--agcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaa 115  Q
    |||||||||||||||||| ||||  ||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  15514712 aacttaactaaaacaaaatatatgcagtgccaagtttaaacattcaaaaaac-gaaacactagtgactgaacattcaaaacagctgtagcaaaattagaa 15514614  T
Q  116 gtccataa----ac-----tatctaaata-----ttccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatc 201  Q
    ||||||||    ||     || | ||||      ||||||| |||||||||||||||||||||||||||||| || ||||||  || ||||||||| |||    
T  15514613 gtccataacaaaacagctgtagcaaaattagaagttccctagtgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatc 15514514  T
Q  202 tcttgtttctaaatttgttggctgaaaagaagaagaaaaataaataagacaatgattagtaaattgaaa--cacaatattgaaactg 286  Q
    ||||||||||||||||||||||||||||||||    |||| ||| |||| ||||| |||||||||||||  || |||||||||||||    
T  15514513 tcttgtttctaaatttgttggctgaaaagaag----aaaaaaaaaaagataatgagtagtaaattgaaacgcaaaatattgaaactg 15514431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 18803282 - 18803024
Alignment:
Q  18 aacttaactaaaacaaaagatata--gcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaa 115  Q
    |||||||||||||||||| |||||  |  ||||||||||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  18803282 aacttaactaaaacaaaatatatacagtgccaagtttaaacatttaaaaaac-gaaacactagtgactgaacattcaaaacagctgtagcaaaattagaa 18803184  T
Q  116 gtccataaac---------tatctaaata-----ttccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatc 201  Q
    |||||||||          || | ||||      ||||||| |||||||||||||||||||||||||||||| || ||||||  || ||||||||| |||    
T  18803183 gtccataaaaaaacagctgtagcaaaattagaagttccctagtgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatc 18803084  T
Q  202 tcttgtttctaaatttgttggctgaaaagaagaagaaaaataaataagacaatgattagta 262  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||    
T  18803083 tcttgtttctaaatttgttggctgaaaagaagaa-aaaaaaaaaaaagataatgattagta 18803024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 15423406 - 15423158
Alignment:
Q  18 aacttaactaaaacaaaagatat--agcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaa 115  Q
    |||||||||||||||||| ||||  ||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  15423406 aacttaactaaaacaaaatatatgcagtgccaagtttaaacattcaaaaaac-gaaacactagtgactgaacattcaaaacagctgtagcaaaattagaa 15423308  T
Q  116 gtccataaactatctaaatattccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatctcttgtttctaaat 215  Q
    ||                   |||||| |||||||||||||||||||||||||||||| || ||||||  || ||||||||| |||||||||||||||||    
T  15423307 gt-------------------tccctagtgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatctcttgtttctaaat 15423227  T
Q  216 ttgttggctgaaaagaagaagaaaaataaataagacaatgattagtaaattgaaa--cacaatattgaaactg 286  Q
    ||||||||||||||||||    |||| ||| |||| ||||| |||||||||||||  || |||||||||||||    
T  15423226 ttgttggctgaaaagaag----aaaaaaaaaaagataatgagtagtaaattgaaacgcaaaatattgaaactg 15423158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 4102 - 3850
Alignment:
Q  18 aacttaactaaaacaaaagatatagca--ccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaa 115  Q
    |||||||||||||| |||||||||  |  |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||    
T  4102 aacttaactaaaaccaaagatatataataccaagtttaaacattcaaaaaacccaaacactagtgactgaacattcaaaacagttgtagcaaaattagaa 4003  T
Q  116 gtccataaactatctaaatattccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatctcttgtttctaaat 215  Q
    ||                   |||||| |||||||||||||||| ||||||||||||| || ||||||  || |||||||||||||||||||||||||||    
T  4002 gt-------------------tccctagtgatgttgcttcaatggtcctcaaggcggtggctagactcagatgaatgtctactatctcttgtttctaaat 3922  T
Q  216 ttgttggctgaaaagaagaagaaaaataaataagacaatgattagtaaattgaaacac--aatattgaaactg 286  Q
    |||||||||||||||||||||||||| ||| || ||| |||||| |||||||||||||  |||||||||||||    
T  3921 ttgttggctgaaaagaagaagaaaaa-aaaaaatacagtgattactaaattgaaacacaaaatattgaaactg 3850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 48631443 - 48631190
Alignment:
Q  18 aacttaactaaaacaaaagatata--gcaccaagtttaaacattcaaaaaactgaaacactagtgactgaacattcaaaacaattgtagcaaaattagaa 115  Q
    ||||||||||||| ||||||||||  |   ||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||||||||||||||    
T  48631443 aacttaactaaaataaaagatatacagtggcaagtttaaacattcaaaaaa-tgaaacactagtgattgaacattcaaaacagctgtagcaaaattagaa 48631345  T
Q  116 gtccataaactatctaaatattccctaatgatgttgcttcaatgatcctcaaggcggtagccagactcctataaatgtctactatctcttgtttctaaat 215  Q
    ||                   |||||| ||||||||||||||||||||| |||||||| || ||||||  || ||||||||| ||||||||||||||| |    
T  48631344 gt-------------------tccctagtgatgttgcttcaatgatcctgaaggcggtggctagactcagatgaatgtctaccatctcttgtttctaagt 48631264  T
Q  216 ttgttggctgaaaagaagaaga-aaaataaataagacaatgattagtaaattgaaa--cacaatattgaaactg 286  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||||||||||  || |||||||||||||    
T  48631263 ttgttggctgaaaagaagaagaaaaaaaaaataagacagtgattagtaaattgaaacgcaaaatattgaaactg 48631190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 7490691 - 7490727
Alignment:
Q  134 tattccctaatgatgttgcttcaatgatcctcaaggc 170  Q
    ||||||||||||||||||||||||||| |||||||||    
T  7490691 tattccctaatgatgttgcttcaatgaacctcaaggc 7490727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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