View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_14 (Length: 361)
Name: NF4215_low_14
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_14 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: scaffold0020 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 158749 - 159091
Alignment:
| Q |
9 |
agcacagaagtcgatctcattggatgaggtcgtaggagaatgcaatccacattccctgcagtaatccacatcaatcttatttccatttgcatttaggatc |
108 |
Q |
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| T |
158749 |
agcacagaagtcgatctcattggatgaggtcgtaggagaatgcaatccatattccctgcagtaatccacatcaatcttatttccatttgcatttaggatc |
158848 |
T |
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| Q |
109 |
agacaacatcaagaatcatatattaggaaaataattgtgcttcgagaatcatataataggattacacaattctacgcttttccggaagtctagacattcc |
208 |
Q |
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| T |
158849 |
cgacaacatcaagaatcatatattaggaaaataattgtgcttcgagaatcatataataggattacataattctacgcttttccggaagtctagacattcc |
158948 |
T |
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| Q |
209 |
cgatcatatttctgcaacataatctgaccagatcgcatatcctaaatgatatttttgacacttctaaccctatctcagcatttgtttcctaaccaaaaac |
308 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
158949 |
cgatcatatttctggaacacaatctgaccagatcgcatatcctaaatgatatttttgacacttctaaccctatctcagcatttgtttcctaaccaaaaac |
159048 |
T |
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| Q |
309 |
aattccctcatcatttctgttgtgtgactatttcacaggttct |
351 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
159049 |
aactccctcatcgtttctgttgtgtgactatttcacaggttct |
159091 |
T |
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