View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_16 (Length: 334)
Name: NF4215_low_16
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 42193428 - 42193635
Alignment:
| Q |
21 |
aaagaaatgagaaagtgttgtcttgatgagttggtggaggagataaaagtgttgtcttggcaatggagcttacaaaggttgaaaattctatcgtgtctct |
120 |
Q |
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| T |
42193428 |
aaagaaatgagaaagtgttgtcttgatgagttggtggaggagataaaagtgttgtcttggcaatggagcttacaaaggttgaaaattccatcgtgtctct |
42193527 |
T |
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| Q |
121 |
tctacgagtggacttggcatcttaagattttccttcttagatagggttgttttgagggttttgctgggcaagtgttccactggtgcagcagctggtttct |
220 |
Q |
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| T |
42193528 |
tctatgagtggacttggcatcttaagattttccttcttagatagggttgttttgagggttttgctgggcaagtgttccactggtgcagccgctggtttct |
42193627 |
T |
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| Q |
221 |
gcctgctg |
228 |
Q |
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| T |
42193628 |
gcctgctg |
42193635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 31552751 - 31552667
Alignment:
| Q |
143 |
taagattttccttcttagatagggttgttttgagggttttgctgggcaagtgttccactggtgcagcagctggtttctgcctgctg |
228 |
Q |
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| T |
31552751 |
taagatttgccttcttagatagggtggtttttaggggtttgcttggc-tgtgttctcctggtgttgcagctggtttctgcctgctg |
31552667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 15472651 - 15472566
Alignment:
| Q |
43 |
ttgatgagttggtggaggagataaaagtgttgtcttggcaatggagcttacaaaggttgaaaattctatcgtgtctcttctacgagt |
129 |
Q |
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| T |
15472651 |
ttgatgagttagtggaggagattaaagt-ttgtcttggcattggagcttaacaagattgaagattgcatcttgcctcttcaacgagt |
15472566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 15510143 - 15510228
Alignment:
| Q |
43 |
ttgatgagttggtggaggagataaaagtgttgtcttggcaatggagcttacaaaggttgaaaattctatcgtgtctcttctacgagt |
129 |
Q |
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| T |
15510143 |
ttgatgagttagtggaggagattaaagt-ttgtcttggcattggagcttaacaagattgaagattgcatcttgcctcttcaacgagt |
15510228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 8170659 - 8170594
Alignment:
| Q |
72 |
ttgtcttggcaatggagcttacaaaggttgaaaattctatcgtgtctcttctacgagtggacttgg |
137 |
Q |
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|||||||||||||||||||| | |||||||| |||| | | || |||||||||||||||| |||| |
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| T |
8170659 |
ttgtcttggcaatggagcttgaataggttgaagattccaacttgcctcttctacgagtggagttgg |
8170594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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