View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4215_low_17 (Length: 315)

Name: NF4215_low_17
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4215_low_17
NF4215_low_17
[»] chr1 (1 HSPs)
chr1 (17-308)||(43673294-43673585)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 43673294 - 43673585
Alignment:
Q  17 acatataagtagaaattatacaaaacgaaaatgacatgaaaagattaaagacgagatcctgagaagaaggaacttaattcacattctttcagcagtcttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43673294 acatataagtagaaattatacaaaacgaaaatgacatgaaaagattaaagacgagatcctgagaagaaggaacttaattcacattctttcagcagtcttt 43673393  T
Q  117 aaatgttcgccatgatctgaaattcattgttctttctattcatatacacaaatattataatcattgaaaataacatttcttttttccattaattctgctt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43673394 aaatgttcgccatgatctgaaattcattgttctttctattcatatacacaaatattataatcattgaaaataacatttcttttttccattaattctgctt 43673493  T
Q  217 gcacatttattaaccttctaggctttttatatcctcacacaacatggacaaaaaatcaaaccagaaataccaataaaaagttgtctgtgctg 308  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43673494 gcacatttcttaaccttctaggctttttatatcctcacacaacatggacaaaaaatcaaaccagaaataccaataaaaagttgtttgtgctg 43673585  T

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