View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4215_low_18 (Length: 311)

Name: NF4215_low_18
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4215_low_18
NF4215_low_18
[»] chr4 (18 HSPs)
chr4 (5-242)||(27269952-27270189)
chr4 (5-212)||(21204844-21205050)
chr4 (14-251)||(30972343-30972580)
chr4 (22-265)||(37772805-37773048)
chr4 (37-151)||(48336967-48337081)
chr4 (31-129)||(29521661-29521759)
chr4 (18-156)||(8830898-8831036)
chr4 (65-240)||(25130447-25130622)
chr4 (39-126)||(53650413-53650500)
chr4 (66-156)||(22653289-22653379)
chr4 (59-124)||(9831418-9831483)
chr4 (66-150)||(5727131-5727215)
chr4 (31-126)||(29969876-29969971)
chr4 (192-246)||(26169354-26169408)
chr4 (58-124)||(42527341-42527407)
chr4 (77-150)||(5760994-5761067)
chr4 (182-219)||(9831323-9831360)
chr4 (59-156)||(20510395-20510492)
[»] chr2 (14 HSPs)
chr2 (24-249)||(35590132-35590357)
chr2 (31-121)||(30505752-30505842)
chr2 (31-159)||(27009197-27009325)
chr2 (31-156)||(36176614-36176738)
chr2 (62-130)||(45131129-45131197)
chr2 (31-161)||(37738057-37738188)
chr2 (31-161)||(9840763-9840893)
chr2 (31-124)||(33645808-33645901)
chr2 (25-161)||(31640236-31640372)
chr2 (65-127)||(38409018-38409080)
chr2 (113-216)||(37120943-37121046)
chr2 (192-251)||(39117325-39117384)
chr2 (31-161)||(27708158-27708288)
chr2 (66-162)||(44735982-44736078)
[»] chr3 (10 HSPs)
chr3 (47-215)||(25845591-25845759)
chr3 (31-125)||(25408797-25408891)
chr3 (41-126)||(36803190-36803275)
chr3 (68-124)||(47161022-47161078)
chr3 (192-246)||(25408677-25408731)
chr3 (77-150)||(18650901-18650974)
chr3 (77-150)||(18690326-18690399)
chr3 (197-246)||(45967110-45967159)
chr3 (192-240)||(3459263-3459311)
chr3 (192-240)||(3857744-3857792)
[»] chr1 (11 HSPs)
chr1 (31-156)||(44675097-44675222)
chr1 (31-125)||(9484878-9484972)
chr1 (31-252)||(4889356-4889577)
chr1 (22-129)||(31069674-31069780)
chr1 (62-124)||(26260785-26260847)
chr1 (31-129)||(52626535-52626633)
chr1 (194-249)||(42450762-42450817)
chr1 (31-161)||(34703454-34703584)
chr1 (32-101)||(36098593-36098662)
chr1 (35-85)||(10686161-10686211)
chr1 (197-245)||(23997025-23997073)
[»] chr8 (8 HSPs)
chr8 (21-208)||(8462475-8462661)
chr8 (45-252)||(16840207-16840416)
chr8 (66-156)||(39435461-39435550)
chr8 (59-124)||(37929141-37929206)
chr8 (74-129)||(21523889-21523944)
chr8 (59-153)||(5048491-5048585)
chr8 (59-124)||(33191203-33191268)
chr8 (65-150)||(33282823-33282908)
[»] scaffold0204 (1 HSPs)
scaffold0204 (37-151)||(24489-24603)
[»] chr6 (10 HSPs)
chr6 (31-156)||(22469424-22469549)
chr6 (31-247)||(9907069-9907285)
chr6 (6-246)||(14215967-14216207)
chr6 (31-159)||(34714914-34715042)
chr6 (65-124)||(11324501-11324560)
chr6 (65-240)||(17292772-17292946)
chr6 (31-124)||(2682796-2682889)
chr6 (31-124)||(7155453-7155546)
chr6 (177-266)||(17779530-17779619)
chr6 (31-125)||(12688220-12688314)
[»] scaffold0047 (1 HSPs)
scaffold0047 (45-234)||(64273-64462)
[»] chr7 (11 HSPs)
chr7 (19-155)||(40347982-40348118)
chr7 (31-215)||(34237097-34237281)
chr7 (66-156)||(17116410-17116500)
chr7 (24-173)||(27076557-27076707)
chr7 (24-173)||(27201594-27201744)
chr7 (73-126)||(26569739-26569792)
chr7 (35-124)||(49035377-49035466)
chr7 (192-240)||(9490975-9491023)
chr7 (62-129)||(12092705-12092772)
chr7 (192-220)||(4998075-4998103)
chr7 (38-126)||(42017819-42017907)
[»] chr5 (12 HSPs)
chr5 (3-129)||(39839933-39840059)
chr5 (31-156)||(19314975-19315100)
chr5 (65-129)||(26778725-26778789)
chr5 (192-251)||(32252026-32252085)
chr5 (35-156)||(12831489-12831610)
chr5 (35-156)||(12863464-12863585)
chr5 (62-126)||(18967885-18967949)
chr5 (73-124)||(29994652-29994703)
chr5 (35-101)||(27482647-27482713)
chr5 (35-124)||(16610602-16610691)
chr5 (22-130)||(11305849-11305955)
chr5 (59-99)||(25942615-25942655)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 27269952 - 27270189
Alignment:
Q  5 aacaaaaagcagtaactaaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaag 104  Q
    ||||||||||| |||||||||||| ||||||||||||||  ||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  27269952 aacaaaaagcattaactaaagaaaacaaataactattagcatatgtccaaaattgtgaatggactaagccaccaaccatgataattgaagggaagtgaag 27270051  T
Q  105 gaaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttc 204  Q
    |||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  27270052 gaaatttcgccttcaaccacatgaaagtgattgacttaattttatcaaccacgtgaacaattggtcattgagtgcctttaaagagcatgttatttctttc 27270151  T
Q  205 tttccagattttccatgttgttgcaaaccaaataacat 242  Q
    |||||||||||  || ||||||||| |||||| |||||    
T  27270152 tttccagatttctcacgttgttgcataccaaagaacat 27270189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 21204844 - 21205050
Alignment:
Q  5 aacaaaaagcagtaactaaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaag 104  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||  |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  21204844 aacaaaaagcattaactaaagaaaacaaataactattagcctatgtccaaaattgtgaatgaactaagccaccaaccatgataattgaagggaagtgaag 21204943  T
Q  105 gaaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttc 204  Q
     ||||||||| ||||||||||||||| ||| || |||||||||||||||||  |||| ||||   |||||||||| |||||||||| |||||||| |||     
T  21204944 aaaatttcgcattcaaccacatgaaagtgattgacttaattttatcaaccatctgaa-aattagtcattgagtgcttttaaagagcctgttatttattta 21205042  T
Q  205 tttccaga 212  Q
    ||||||||    
T  21205043 tttccaga 21205050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 30972343 - 30972580
Alignment:
Q  14 cagtaactaaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcg 113  Q
    |||| ||||||||||||||||||||||||| ||||||  ||||| |||||  |||||| |||||| |||||||| ||||| ||||| |||||||||||||    
T  30972343 cagtgactaaagaaagcaaataactattagcctatgccaaaaatagtgaaatgactaagccaccagccatgatagttgaagggaagagaaggaaatttcg 30972442  T
Q  114 ccttcaaccacatgaaaatgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttccagat 213  Q
    |||||| |||||||||| | || | |||||||||||||||||| || | |||||| || |   |||| ||||||||||||||||||||||||||||| ||    
T  30972443 ccttcagccacatgaaagtcagcgacttaattttatcaaccacctgcataattgagcactctttgccattaaagagcatgttatttctttctttccaaat 30972542  T
Q  214 tttccatgttgttgcaaaccaaataacatgtaaaattg 251  Q
    |||||| || |||||| |||||| ||| ||||||||||    
T  30972543 tttccacgtagttgcataccaaagaacctgtaaaattg 30972580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 37773048 - 37772805
Alignment:
Q  22 aaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaac 121  Q
    |||||| ||||||||| ||||  | |||| |||||| ||||| ||||||| |||||||||||| |||||||| ||||| ||||||||||||   ||||||    
T  37773048 aaagaatgcaaataacaattaaccaatgcccaaaatggtgaaaggactaagccaccaaccatggtaattgaagggaagagaaggaaatttctttttcaac 37772949  T
Q  122 cacatgaaaatgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttccagattttccatg 221  Q
    || | |||| |||| | |||||| ||||||||||  ||||||| || |||||   ||||||| ||||   |||||||| ||| ||| || |||||||| |    
T  37772948 cataagaaagtgagcgacttaatgttatcaaccatctgaacaactgtacattatttgcctttgaagattctgttatttgtttattttcaaattttccacg 37772849  T
Q  222 ttgttgcaaaccaaataacatgtaaaattgctcagcgagcctta 265  Q
      |||||||| |||| ||| || | ||||| |||||||||||||    
T  37772848 cagttgcaaatcaaaaaacctgaagaattgatcagcgagcctta 37772805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 48337081 - 48336967
Alignment:
Q  37 ctattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagt 136  Q
    ||||||| ||||||  || || ||||||| |||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||| | ||     
T  48337081 ctattagcctatgcctaatatagtgaatgaactaaaccaccaactatgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagc 48336982  T
Q  137 ggcttaattttatca 151  Q
    | |||||||||||||    
T  48336981 gacttaattttatca 48336967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 29521661 - 29521759
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaa 129  Q
    ||||||||| ||||| |||| ||| |||||||| ||| ||||||||||| ||||||||||||| ||||| |||| | ||||||||||||||||||||||    
T  29521661 aaataactactagtcaatgcccaacattgtgaacggattaaaccaccaatcatgataattgaaaggaagagaagcacatttcgccttcaaccacatgaa 29521759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 8830898 - 8831036
Alignment:
Q  18 aactaaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgcctt 117  Q
    ||||||||||| |||||||| ||||  | ||||||||| | ||||| ||| ||| ||||||  |||| |||||||| |||||  || |||||||| ||||    
T  8830898 aactaaagaaaacaaataacgattaaccgatgctcaaattggtgaaaggaataagccaccagtcatggtaattgaagggaagataaagaaatttctcctt 8830997  T
Q  118 caaccacatgaaaatgagtggcttaattttatcaaccac 156  Q
    |||| |||| ||| |||| | ||||||||| ||||||||    
T  8830998 caactacataaaagtgagcgacttaattttgtcaaccac 8831036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 25130447 - 25130622
Alignment:
Q  65 ggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaaccacgtgaacaa 164  Q
    ||||||| ||||||||||||||| ||||  | ||| | || ||||||| |||||||||||||||||  ||| | ||| || ||||| ||||| || ||||    
T  25130447 ggactaagccaccaaccatgatagttgagggaaagagtagcaaatttctccttcaaccacatgaaagcgagggacttgatcttatcgaccacttgcacaa 25130546  T
Q  165 ttgaacattgagtgcctttaaagagcatgttatttctttctttccagattttccatgttgttgcaaaccaaataac 240  Q
    |||| ||||  || || ||||| | | |||| || ||||||||||| |||| |||   | ||||||||||||||||    
T  25130547 ttgagcattttgttcccttaaacaacttgttgttcctttctttccatatttcccacactattgcaaaccaaataac 25130622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 53650413 - 53650500
Alignment:
Q  39 attagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacat 126  Q
    ||||||| |||  ||| |||||||||||||||| ||| ||| |||| |||||||| ||||| | || ||| |||||||||||||||||    
T  53650413 attagtcaatgtccaacattgtgaatggactaagccatcaagcatggtaattgaaaggaagggtagtaaacttcgccttcaaccacat 53650500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 22653379 - 22653289
Alignment:
Q  66 gactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaaccac 156  Q
    |||||| ||||||||||||||||||||| | ||   ||| ||||||||||||||||||||| ||  |||| |  ||||| |||||||||||    
T  22653379 gactaagccaccaaccatgataattgaaggtaatgtaagcaaatttcgccttcaaccacataaatgtgagcgatttaatcttatcaaccac 22653289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 9831483 - 9831418
Alignment:
Q  59 gtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    ||||| ||||||| |||||| |||||||||||||| ||||||| |   ||||||||||||||||||    
T  9831483 gtgaacggactaagccaccagccatgataattgaagggaagtgtaacgaatttcgccttcaaccac 9831418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 5727215 - 5727131
Alignment:
Q  66 gactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatc 150  Q
    |||||| ||| ||||||||||||||||  || || |||| ||||||  ||||||||||||||||  | || ||||||||||||||    
T  5727215 gactaagccatcaaccatgataattgagagggagagaagcaaattttcccttcaaccacatgaatgtaagcggcttaattttatc 5727131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 29969971 - 29969876
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacat 126  Q
    |||||||||||||||||||   |  || ||||| ||||||| ||||||||||| | | | ||| ||||| | || |||||||||||||||||||||    
T  29969971 aaataactattagtctatgtctatcatggtgaacggactaagccaccaaccataaaagtagaagggaagagtagtaaatttcgccttcaaccacat 29969876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 26169354 - 26169408
Alignment:
Q  192 tgttatttctttctttccagattttccatgttgttgcaaaccaaataacatgtaa 246  Q
    ||||||||||||||||||| ||||  || | |||||||||||||||||| |||||    
T  26169354 tgttatttctttctttccatatttctcacgctgttgcaaaccaaataacttgtaa 26169408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 42527341 - 42527407
Alignment:
Q  58 tgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    |||||| ||| ||| ||||||||||||||||||| | ||||| | || ||||||| |||||||||||    
T  42527341 tgtgaacggattaagccaccaaccatgataattggaaggaagagtagaaaatttcaccttcaaccac 42527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 5761067 - 5760994
Alignment:
Q  77 caaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatc 150  Q
    ||||||||||||||||  || || |||| ||||||  ||||||||||||||||  | || ||||||||||||||    
T  5761067 caaccatgataattgagagggagagaagcaaattttcccttcaaccacatgaatgtaagcggcttaattttatc 5760994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 9831360 - 9831323
Alignment:
Q  182 ttaaagagcatgttatttctttctttccagattttcca 219  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  9831360 ttaaacagcatgttatttctttctttccaaattttcca 9831323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 20510492 - 20510395
Alignment:
Q  59 gtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaaccac 156  Q
    ||||| ||||||| ||||||||||||| ||||||| ||||| |    ||||||| ||||||||||||| |||  ||  | |||||| |||||||||||    
T  20510492 gtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccacataaaagagatggacttaatcttatcaaccac 20510395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 35590357 - 35590132
Alignment:
Q  24 agaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaacca 123  Q
    ||||||| | |||||||||| |||||| |||||| | ||| || |||| ||||||||||||||| ||||| |||||  | ||| | |||||||||| |||    
T  35590357 agaaagccattaactattagcctatgcccaaaatagagaaggggctaagccaccaaccatgatagttgaagggaagacacggatacttcgccttcagcca 35590258  T
Q  124 catgaaaatgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttccagattttccatgtt 223  Q
    | ||||| | ||   |||||||||||||||||| |||| |||||| ||||   |||| || || | | |||||||||||||||||||||||| ||| ||     
T  35590257 cctgaaagtcagcaacttaattttatcaaccacctgaataattgagcattctttgccattgaaaaacctgttatttctttctttccagatttcccacgta 35590158  T
Q  224 gttgcaaaccaaataacatgtaaaat 249  Q
    |||||| |||||| ||||||||||||    
T  35590157 gttgcataccaaagaacatgtaaaat 35590132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 30505842 - 30505752
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaac 121  Q
    ||||||||||||| |||||| ||| || || ||  |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||    
T  30505842 aaataactattagcctatgcccaacatggtaaacagactaaaccaccaaccatgataattgaagggaagtgaagaaaatttctccttcaac 30505752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 27009325 - 27009197
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    ||||||||||||| |||||  ||  || || || ||||||| |||||||||||| |||||||| ||||| |||| ||||||||||||||| ||| | |||    
T  27009325 aaataactattagcctatgtccagtatggtaaacggactaagccaccaaccatggtaattgaagggaagagaagtaaatttcgccttcaatcacctaaaa 27009226  T
Q  131 atgagtggcttaattttatcaaccacgtg 159  Q
      ||| | |||||| ||||||||||||||    
T  27009225 gcgagagacttaatcttatcaaccacgtg 27009197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 36176614 - 36176738
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    ||||||||||||| |||| | ||| || || ||||||||||| ||||||||||||||||||||  |||| |||| ||||||| || | |||||||| ||     
T  36176614 aaataactattagcctatacccaacatggtaaatggactaaaacaccaaccatgataattgaagagaagagaagcaaatttcaccat-aaccacataaat 36176712  T
Q  131 atgagtggcttaattttatcaaccac 156  Q
     |||| | |||||| |||||||||||    
T  36176713 gtgagcgacttaatcttatcaaccac 36176738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 45131129 - 45131197
Alignment:
Q  62 aatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    |||||||||| |||||| |||||||||||||| ||||| |||| | ||||| |||||||||||||||||    
T  45131129 aatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccacatgaaa 45131197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 37738057 - 37738188
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttca-accacatgaa 129  Q
    ||||||||||||| |||||| |||||| ||||| ||||||| |||||| |||||| | || || ||||| | ||  |||||||||||||  |||||||||    
T  37738057 aaataactattagcctatgcccaaaatggtgaacggactaagccaccagccatgaaagttaaagggaagagtagtgaatttcgccttcaggccacatgaa 37738156  T
Q  130 aatgagtggcttaattttatcaaccacgtgaa 161  Q
    | |||| | |||||| |||||| |||| ||||    
T  37738157 agtgagcgacttaatcttatcagccacctgaa 37738188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 9840893 - 9840763
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    |||||||||||||  ||||| ||  || ||||| ||| ||| ||||||||||||||||||||| ||||| | || |||||| |||||||| ||||| |||    
T  9840893 aaataactattagcatatgcccatcatggtgaacggattaagccaccaaccatgataattgaatggaagagtagcaaattttgccttcaatcacataaaa 9840794  T
Q  131 atgagtggcttaattttatcaaccacgtgaa 161  Q
      ||| |  ||||| ||||||||||| ||||    
T  9840793 gcgagcgatttaatcttatcaaccacttgaa 9840763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 33645808 - 33645901
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    |||||||||| || ||||| ||||||| |||||  |||||| |||||||||||| |||||||| ||||| | || ||||||  |||||||||||    
T  33645808 aaataactatcagcctatgttcaaaatggtgaacagactaacccaccaaccatggtaattgaaaggaagagtagcaaatttttccttcaaccac 33645901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 31640372 - 31640236
Alignment:
Q  25 gaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    ||||| ||||||| | ||| ||||||  | |||||| || ||||||| |||||| ||||| |||||||  ||||| |||| |||||||||||||||||||    
T  31640372 gaaaggaaataaccactagcctatgcctataattgtaaacggactaagccaccatccatggtaattgaggggaagagaagcaaatttcgccttcaaccac 31640273  T
Q  125 atgaaaatgagtggcttaattttatcaaccacgtgaa 161  Q
     | |||   |||| |||||| ||||| ||||| ||||    
T  31640272 gtaaaagcaagtgacttaatcttatctaccacttgaa 31640236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 38409080 - 38409018
Alignment:
Q  65 ggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatg 127  Q
    ||||| ||||||||||||||||||||||| ||||||| ||  |||||| |||||||| |||||    
T  38409080 ggactgaaccaccaaccatgataattgaagggaagtgtagcgaatttcaccttcaactacatg 38409018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 37120943 - 37121046
Alignment:
Q  113 gccttcaaccacatgaaaatgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttccaga 212  Q
    |||||||||||||| ||   ||| | ||| ||||||||||||||||||| ||| || ||||   || |||| || | |||||||||||||||||| ||||    
T  37120943 gccttcaaccacataaatgagagcgactttattttatcaaccacgtgaataatggagcattccttgactttgaatatcatgttatttctttcttttcaga 37121042  T
Q  213 tttt 216  Q
    ||||    
T  37121043 tttt 37121046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 39117384 - 39117325
Alignment:
Q  192 tgttatttctttctttccagattttccatgttgttgcaaaccaaataacatgtaaaattg 251  Q
    |||||||||||||||||||||||| |||  | || ||| |||||||||| ||||||||||    
T  39117384 tgttatttctttctttccagatttcccacatagtagcataccaaataacctgtaaaattg 39117325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 27708158 - 27708288
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    ||||||||||||| |||||| ||  |  |||||  || ||| |||||||||||||  |||||| ||||| | || |||||||||||| |||||| | |||    
T  27708158 aaataactattagcctatgcccagtacggtgaacagattaagccaccaaccatgaagattgaagggaagagtagcaaatttcgcctttaaccacgtaaaa 27708257  T
Q  131 atgagtggcttaattttatcaaccacgtgaa 161  Q
      ||| | |||||| ||||||||||| ||||    
T  27708258 gcgagcgacttaatcttatcaaccacctgaa 27708288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 44735982 - 44736078
Alignment:
Q  66 gactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaaccacgtgaac 162  Q
    |||||| |||| |||||||| ||||||| ||||| | |  ||| ||||||||||||||||| ||| |||| | |||||| || || ||||| |||||    
T  44735982 gactaagccactaaccatgaaaattgaagggaagagtattaaacttcgccttcaaccacataaaagtgagggacttaatcttgtcgaccacctgaac 44736078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 25845759 - 25845591
Alignment:
Q  47 atgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattt 146  Q
    |||| |||||| ||| ||||||||| |||||||||||| || || || || || |||||||| |||||||||||||||||||||  ||| | ||||||||    
T  25845759 atgcccaaaatggtgtatggactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagagagcgacttaattt 25845660  T
Q  147 tatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttccagattt 215  Q
    |||||||||| |||||||||||||| |   |||||||||| |  ||||| |||||||||||||| ||||    
T  25845659 tatcaaccacctgaacaattgaacaatctttgcctttaaataatatgttgtttctttctttccaaattt 25845591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 25408891 - 25408797
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccaca 125  Q
    ||||||| ||||| |||| | ||| || || |||||||||| ||||||||||||||||||||| | || |||||  |||||||||||||||||||    
T  25408891 aaataacaattagcctatacccaacatggtaaatggactaagccaccaaccatgataattgaaggaaattgaagtgaatttcgccttcaaccaca 25408797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 36803275 - 36803190
Alignment:
Q  41 tagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacat 126  Q
    ||||| |||||||| |||||||| ||||||| ||||||| ||||| ||||||| ||||  |  | ||| |||||||||||||||||    
T  36803275 tagtcaatgctcaacattgtgaacggactaagccaccaagcatgaaaattgaaaggaatagtggtaaacttcgccttcaaccacat 36803190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 47161078 - 47161022
Alignment:
Q  68 ctaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    |||| |||||||||||| |||||||| ||||| |||||||| ||| |||||||||||    
T  47161078 ctaagccaccaaccatggtaattgaatggaagagaaggaaacttcaccttcaaccac 47161022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 25408731 - 25408677
Alignment:
Q  192 tgttatttctttctttccagattttccatgttgttgcaaaccaaataacatgtaa 246  Q
    |||||||||||||||||||||||| |||    ||||||||||||||||| |||||    
T  25408731 tgttatttctttctttccagatttcccacacggttgcaaaccaaataacctgtaa 25408677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 18650974 - 18650901
Alignment:
Q  77 caaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatc 150  Q
    ||||||||||||||||  || || |||| ||||||  ||||||||||||||||  | || ||||||||||||||    
T  18650974 caaccatgataattgagagggagagaagcaaattttcccttcaaccacatgaatgtaagcggcttaattttatc 18650901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 18690399 - 18690326
Alignment:
Q  77 caaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatc 150  Q
    ||||||||||||||||  || || |||| ||||||  ||||||||||||||||  | || ||||||||||||||    
T  18690399 caaccatgataattgagagggagagaagcaaattttcccttcaaccacatgaatgtaagcggcttaattttatc 18690326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 45967110 - 45967159
Alignment:
Q  197 tttctttctttccagattttccatgttgttgcaaaccaaataacatgtaa 246  Q
    |||||||||||||| | || ||| |||||||||||||||||||| |||||    
T  45967110 tttctttctttccataattcccacgttgttgcaaaccaaataacctgtaa 45967159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 3459311 - 3459263
Alignment:
Q  192 tgttatttctttctttccagattttccatgttgttgcaaaccaaataac 240  Q
    |||| |||||||||||||| ||||||||  | |||||||||||||||||    
T  3459311 tgttgtttctttctttccaaattttccacatcgttgcaaaccaaataac 3459263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 3857744 - 3857792
Alignment:
Q  192 tgttatttctttctttccagattttccatgttgttgcaaaccaaataac 240  Q
    ||||||||||||||||||| |||| |||   ||||||||||||||||||    
T  3857744 tgttatttctttctttccaaatttcccacagtgttgcaaaccaaataac 3857792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 44675222 - 44675097
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    |||||||||||||||||||| ||| ||  | || ||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||     
T  44675222 aaataactattagtctatgcccaacatgataaacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccacatgaat 44675123  T
Q  131 atgagtggcttaattttatcaaccac 156  Q
       ||||||||||| |||||||||||    
T  44675122 gcaagtggcttaatcttatcaaccac 44675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 9484972 - 9484878
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccaca 125  Q
    ||||||| | ||||| |||| ||| ||||||||  |||||||||||||||||||||||||||| ||||| |||  ||||||||||||||||||||    
T  9484972 aaataacaactagtcgatgcccaacattgtgaactgactaaaccaccaaccatgataattgaagggaagagaaacaaatttcgccttcaaccaca 9484878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 4889577 - 4889356
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    |||||||| |||| |||||  |||||| |||||||||||||  ||||| |||||||| || || ||||| ||||| || |||||||| |||||||||||     
T  4889577 aaataacttttagcctatgtccaaaatagtgaatggactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaat 4889478  T
Q  131 atgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttccagattttccatgttgttgcaa 230  Q
       || | |||||||||||||||||| | |   ||||| ||||   |||  || || | | ||||||||||||||||| | ||||  || ||  ||||||    
T  4889477 gcaagcgacttaattttatcaaccacataagacattgagcattctttgctattgaataacctgttatttctttctttctaaatttctcacgtaattgcaa 4889378  T
Q  231 accaaataacatgtaaaattgc 252  Q
    |||||||||| |||||||||||    
T  4889377 accaaataacttgtaaaattgc 4889356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 31069780 - 31069674
Alignment:
Q  22 aaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaac 121  Q
    |||||||| ||||||||| ||||| |||||||| || || || ||| ||||| |||| ||||||||||| || ||||| || | ||||||||||||||||    
T  31069780 aaagaaag-aaataactactagtcaatgctcaacatagtaaacggattaaactaccatccatgataatttaatggaagagaggcaaatttcgccttcaac 31069682  T
Q  122 cacatgaa 129  Q
    ||||||||    
T  31069681 cacatgaa 31069674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 26260847 - 26260785
Alignment:
Q  62 aatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    |||||||||| |||||| |||||||||||||| ||||| |||| ||| |||||||||||||||    
T  26260847 aatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccac 26260785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 52626633 - 52626535
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaa 129  Q
    ||||||| ||||| |||| | ||| || || |||||||||| ||||||||||||||||||||| ||||| |||   ||||| |||| ||||||||||||    
T  52626633 aaataacaattagcctatacgcaatatggtaaatggactaagccaccaaccatgataattgaagggaagagaaacgaattttgcctccaaccacatgaa 52626535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 42450762 - 42450817
Alignment:
Q  194 ttatttctttctttccagattttccatgttgttgcaaaccaaataacatgtaaaat 249  Q
    ||||||||||||||||| |||||||||  |||||||||| ||||||| ||||||||    
T  42450762 ttatttctttctttccatattttccatactgttgcaaactaaataacctgtaaaat 42450817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 34703454 - 34703584
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    ||||||||||||| |||||  ||| || ||||| | ||| | ||||||||||||| | || || ||||| |  | | ||||||||||||||||||| |||    
T  34703454 aaataactattagcctatgtccaacatggtgaacgaacttagccaccaaccatgaaagttaaagggaagagttgcatatttcgccttcaaccacataaaa 34703553  T
Q  131 atgagtggcttaattttatcaaccacgtgaa 161  Q
     |||| | |||||| ||||||||||| ||||    
T  34703554 gtgagggacttaatcttatcaaccacctgaa 34703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 36098593 - 36098662
Alignment:
Q  32 aataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtg 101  Q
    ||||||| |||| |||||| ||| || ||||| ||||||| |||||| |||||||||||||| |||||||    
T  36098593 aataactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtg 36098662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 10686161 - 10686211
Alignment:
Q  35 aactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatga 85  Q
    ||||||||| |||||| ||| |||||||| |||| ||||||||||||||||    
T  10686161 aactattagcctatgcccaacattgtgaacggacaaaaccaccaaccatga 10686211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 23997073 - 23997025
Alignment:
Q  197 tttctttctttccagattttccatgttgttgcaaaccaaataacatgta 245  Q
    |||||||||||||| | || ||| |||||||||||| ||||||||||||    
T  23997073 tttctttctttccataattcccacgttgttgcaaactaaataacatgta 23997025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 8462475 - 8462661
Alignment:
Q  21 taaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaa 120  Q
    ||||||||  ||||||| ||||| ||||| |||  || || ||  |||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||    
T  8462475 taaagaaaagaaataacaattagcctatgttcatcatggtaaacagactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaa 8462574  T
Q  121 ccacatgaaaatgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttc 208  Q
    |||||||||  |||||| |||||| ||||||||||| || ||||  |||||||   ||||||| || | | |||||||||||||||||    
T  8462575 ccacatgaatgtgagtgacttaatcttatcaaccacctgcacaaccgaacattctttgcctttgaatatc-tgttatttctttctttc 8462661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 252
Target Start/End: Complemental strand, 16840416 - 16840207
Alignment:
Q  45 ctatgctcaaaattgtgaatggactaaaccaccaaccatgata--attgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggctta 142  Q
    |||||| |||||| |||||||| |||| ||||||| |||||||  |||||| ||||| ||||   ||||| |||||||||||||||||| ||| | ||||    
T  16840416 ctatgcccaaaatggtgaatgggctaagccaccaagcatgatataattgaagggaagagaagagtatttctccttcaaccacatgaaaacgagcgactta 16840317  T
Q  143 attttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttccagattttccatgttgttgcaaaccaaataacat 242  Q
    | ||| || ||||  |||  ||| || |  ||  || | ||||| | | ||||||||||||||||||| |||| ||| || ||||||||||| ||||| |    
T  16840316 actttttctaccagttgaggaatagacctatgcttgtcgttaaataacttgttatttctttctttccaaatttcccacgtagttgcaaaccagataacct 16840217  T
Q  243 gtaaaattgc 252  Q
    ||||||||||    
T  16840216 gtaaaattgc 16840207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 39435461 - 39435550
Alignment:
Q  66 gactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaaccac 156  Q
    |||| ||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||   ||||| |||||| |||||||||||    
T  39435461 gactcaaccaccaaccatgataat-gaaaggaagagaagcaaatttcgccttcaaccacatgaactcgagtgacttaatcttatcaaccac 39435550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 37929206 - 37929141
Alignment:
Q  59 gtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    ||||| ||||||| ||||||||||||||| || || ||||| | |||||||||| |||||||||||    
T  37929206 gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 37929141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 21523944 - 21523889
Alignment:
Q  74 caccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaa 129  Q
    |||||||||||||| ||||| ||||| || ||||| ||||| ||||||||||||||    
T  21523944 caccaaccatgatagttgaagggaagagatggaaacttcgctttcaaccacatgaa 21523889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 5048585 - 5048491
Alignment:
Q  59 gtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaac 153  Q
    ||||| ||||||| ||||||||||||| | ||||| ||||| | |   |||||| ||||||||||||| |||  ||| |||||||| ||||||||    
T  5048585 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtatttaatttcaccttcaaccacataaaagagaggggcttaatcttatcaac 5048491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 33191203 - 33191268
Alignment:
Q  59 gtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    ||||| ||||||| ||||||||||||||||||||| ||||| | |  |||||||  ||||||||||    
T  33191203 gtgaacggactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccac 33191268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 33282908 - 33282823
Alignment:
Q  65 ggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatc 150  Q
    ||||||| ||||||||||||||||||||  || || |||| ||||||  ||||||||||| | ||| | || | ||||||||||||    
T  33282908 ggactaagccaccaaccatgataattgagagggagagaagcaaatttttccttcaaccacctaaaagtaagcgacttaattttatc 33282823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 24603 - 24489
Alignment:
Q  37 ctattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagt 136  Q
    ||||||| ||||||  || || ||||||| |||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||| | ||     
T  24603 ctattagcctatgcctaatatagtgaatgaactaaaccaccaactatgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagc 24504  T
Q  137 ggcttaattttatca 151  Q
    | |||||||||||||    
T  24503 gacttaattttatca 24489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 22469549 - 22469424
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    ||||||| ||||  ||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||| |||||  ||||  |||||||||||||||||    
T  22469549 aaataacaattaacctatgctcaaaatggtgaatggactaagccaccaagcatgataattgaagggaagagaagggtatttatccttcaaccacatgaaa 22469450  T
Q  131 atgagtggcttaattttatcaaccac 156  Q
      ||| | |||||||||||| |||||    
T  22469449 gcgagcgacttaattttatctaccac 22469424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 9907285 - 9907069
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    ||||||| ||||| ||||||  ||||| ||||||||| ||| ||||||  ||||||||||||| ||||  |||||  ||||| |||||||||||||||||    
T  9907285 aaataacaattagcctatgcctaaaatggtgaatggattaagccaccacgcatgataattgaagggaatagaagggtatttctccttcaaccacatgaaa 9907186  T
Q  131 atgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttccagattttccatgttgttgcaa 230  Q
      ||| | |||||||||||| ||||| |||  ||| ||    |   |||| ||||| | | ||||||||||||||||||| |||| ||| |  |||||||    
T  9907185 gcgagcgacttaattttatctaccacctgaggaatagaggtatccttgccattaaataacctgttatttctttctttccaaatttcccacgaagttgcaa 9907086  T
Q  231 accaaataacatgtaaa 247  Q
    |||||| ||| ||||||    
T  9907085 accaaagaacctgtaaa 9907069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 14215967 - 14216207
Alignment:
Q  6 acaaaaagcagtaactaaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaagg 105  Q
    ||||||| |||| | |||||||||| |||||||||||| |||| | ||| || || || ||  ||| |||||||| |||||| | |||  |||| |||||    
T  14215967 acaaaaaacagtgagtaaagaaagccaataactattagcctattcccaacatggtaaaagggttaagccaccaactatgatagtcgaagagaagagaagg 14216066  T
Q  106 aaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttct 205  Q
    |||||||  |||||||||||||||  | || | ||||| |||||||| ||| || |||||||| ||||   |||| ||||| | | | ||||| ||||||    
T  14216067 aaatttcttcttcaaccacatgaacgtcagcgacttaactttatcaatcacctgcacaattgagcattctttgccattaaataccctattattcctttct 14216166  T
Q  206 ttccagattttccatgttgttgcaaaccaaataacatgtaa 246  Q
    ||||| |||| |||| |  |  || ||||||||||||||||    
T  14216167 ttccatatttcccatataatgacataccaaataacatgtaa 14216207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 34715042 - 34714914
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    |||||||||||||||||||  ||  || || ||  |||||| |||||||||||| |||||||  ||||| |||| |||||| || ||||||||| | |||    
T  34715042 aaataactattagtctatgtccagtatggtaaacagactaagccaccaaccatggtaattgatgggaagagaagtaaattttgctttcaaccacctaaaa 34714943  T
Q  131 atgagtggcttaattttatcaaccacgtg 159  Q
     |||| | |||||| ||||||||||||||    
T  34714942 gtgagagacttaatcttatcaaccacgtg 34714914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 11324560 - 11324501
Alignment:
Q  65 ggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    ||||||| |||||| |||||||||||||| ||||| |||| |||||||||||||||||||    
T  11324560 ggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccac 11324501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 17292772 - 17292946
Alignment:
Q  65 ggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaaccacgtgaacaa 164  Q
    ||||||| ||| ||||||||||||||||| ||||| |||| |||||| || ||||||||||||||    || | |||||| |||   ||||| || | ||    
T  17292772 ggactaagccatcaaccatgataattgaagggaagagaagcaaatttggcgttcaaccacatgaatgctagagacttaatcttaatgaccacctgcataa 17292871  T
Q  165 ttgaacattgagtgcctttaaagagcatgttatttctttctttccagattttccatgttgttgcaaaccaaataac 240  Q
    | || ||||   |||| ||||| | ||||||||||||||||||||| |||| ||||   |||||||||||||||||    
T  17292872 tcgatcattctttgccattaaata-catgttatttctttctttccaaatttcccatacggttgcaaaccaaataac 17292946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 2682889 - 2682796
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    |||||||| |||  |||||||||  || ||||| ||||||| ||||||||||||| |||||||  |||  | |||||||||| |||||||||||    
T  2682889 aaataacttttaacctatgctcagcatggtgaaaggactaagccaccaaccatgacaattgaagagaatagtaggaaatttcaccttcaaccac 2682796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 7155546 - 7155453
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    |||||||| |||| |||||||||  |  ||||| |||||||||||||| | |||||||||||| || || |||| ||||||  |||||||||||    
T  7155546 aaataactcttagcctatgctcagtacggtgaacggactaaaccaccatctatgataattgaagggtagagaagaaaatttttccttcaaccac 7155453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 17779530 - 17779619
Alignment:
Q  177 tgcctttaaagagcatgttatttctttctttccagattttccatgttgttgcaaaccaaataacatgtaaaattgctcagcgagccttag 266  Q
    |||||||||| ||  || ||||||||| |||||| |||||||| |  | ||||||||||||||| |  ||||||| ||||||||||||||    
T  17779530 tgcctttaaatagtctgctatttctttatttccaaattttccacgcagatgcaaaccaaataacctaaaaaattgatcagcgagccttag 17779619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 12688314 - 12688220
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccaca 125  Q
    ||||||| ||||| |||||| ||| |||| ||| ||||||| |||||| |||||  |||| || ||||| | || ||||||| ||||||||||||    
T  12688314 aaataacaattagcctatgcccaacattgcgaacggactaagccaccagccatgtaaattaaagggaagagtagtaaatttctccttcaaccaca 12688220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 64273 - 64462
Alignment:
Q  45 ctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaat 144  Q
    |||||| |||||| ||||| ||||||| ||||||| ||||||||||||| | ||| |||||  ||||| |||||||||||| ||||  ||| | ||||||    
T  64273 ctatgcccaaaatggtgaaaggactaagccaccaagcatgataattgaaggaaagagaagggtatttctccttcaaccacaagaaagcgagggacttaat 64372  T
Q  145 tttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttccagattttccatgttgttgcaaacca 234  Q
    |||||| ||||| |||  ||||||||  |   |||| ||||| | | ||||||||||||||||||| ||||  || || |||||||||||    
T  64373 tttatctaccacctgaggaattgaactatccttgccattaaataacctgttatttctttctttccaaatttcacacgtagttgcaaacca 64462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 40348118 - 40347982
Alignment:
Q  19 actaaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttc 118  Q
    |||||||||||| ||||||||||||||||||  ||| || ||||| ||  ||| ||| ||||||||||| ||||| |||||  | ||||| |||||||||    
T  40348118 actaaagaaagccaataactattagtctatgtccaacatagtgaaagggttaagccatcaaccatgatagttgaaaggaagaaatggaaacttcgccttc 40348019  T
Q  119 aaccacatgaaaatgagtggcttaattttatcaacca 155  Q
    |||||||||||  | || | |||||||||||| ||||    
T  40348018 aaccacatgaacgtcagcgacttaattttatctacca 40347982  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 34237281 - 34237097
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    |||||| | |||| |||||| ||| || ||||| ||||||| ||||||||||||||||||||| ||||    | ||||||||||||||||||||   |||    
T  34237281 aaataatttttagcctatgcccaacatggtgaaaggactaagccaccaaccatgataattgaagggaataatatgaaatttcgccttcaaccaccaaaaa 34237182  T
Q  131 atgagtggcttaattttatcaaccacgtgaacaattgaacattgagtgcctttaaagagcatgttatttctttctttccagattt 215  Q
    | ||| | ||||||||| |||||||| ||||  | ||||||||   || || | || | |||||||||| |||||||||| ||||    
T  34237181 acgagagacttaattttgtcaaccacctgaattactgaacattctttgtctctgaaaaacatgttatttttttctttccaaattt 34237097  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 17116410 - 17116500
Alignment:
Q  66 gactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatgagtggcttaattttatcaaccac 156  Q
    |||||| |||||||||||||||| |||| ||||| |||| | ||||||||||||||||||| ||   ||||| |||||| |||||||||||    
T  17116410 gactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttcaaccacataaatgcgagtgacttaatcttatcaaccac 17116500  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 27076707 - 27076557
Alignment:
Q  24 agaaagcaaataactattagtctatgctcaaaattgtgaatg-gactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaacc 122  Q
    ||||||| |||||||||||| |||||  | | || ||||||| | |||| ||||||||||||||| ||||| ||||  || ||||| ||||||||| |||    
T  27076707 agaaagccaataactattagcctatgtccgatatagtgaatgaggctaagccaccaaccatgatagttgaagggaatagatggaaacttcgccttctacc 27076608  T
Q  123 acatgaaaatgagtggcttaattttatcaaccacgtgaacaattgaacatt 173  Q
    || ||||| | ||   || ||||||||||||||| |||| |||||||||||    
T  27076607 acctgaaagtcagctactcaattttatcaaccacttgaataattgaacatt 27076557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 27201594 - 27201744
Alignment:
Q  24 agaaagcaaataactattagtctatgctcaaaattgtgaatg-gactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaacc 122  Q
    ||||||| |||||||||||| |||||  | | || ||||||| | |||| ||||||||||||||| ||||| ||||  || ||||| ||||||||| |||    
T  27201594 agaaagccaataactattagcctatgtccgatatagtgaatgaggctaagccaccaaccatgatagttgaagggaatagatggaaacttcgccttctacc 27201693  T
Q  123 acatgaaaatgagtggcttaattttatcaaccacgtgaacaattgaacatt 173  Q
    || ||||| | ||   || ||||||||||||||| |||| |||||||||||    
T  27201694 acctgaaagtcagctactcaattttatcaaccacttgaataattgaacatt 27201744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 26569792 - 26569739
Alignment:
Q  73 ccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacat 126  Q
    |||||| |||||||||||||| ||||| |||| || ||||||||||||||||||    
T  26569792 ccaccatccatgataattgaagggaagagaagcaagtttcgccttcaaccacat 26569739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 49035377 - 49035466
Alignment:
Q  35 aactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    ||||||||| |||||| || ||| ||||| ||| |  | |||| ||||||||||||||| ||||| |||| || ||||||||||||||||    
T  49035377 aactattagcctatgcccagaatggtgaacggattctaacacctaccatgataattgaagggaagagaagcaactttcgccttcaaccac 49035466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 9490975 - 9491023
Alignment:
Q  192 tgttatttctttctttccagattttccatgttgttgcaaaccaaataac 240  Q
    ||||||||||||||||||| ||||||||   ||||||||||||||||||    
T  9490975 tgttatttctttctttccaaattttccacagtgttgcaaaccaaataac 9491023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 12092772 - 12092705
Alignment:
Q  62 aatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaa 129  Q
    |||||||||| |||| | |||||||| || || ||||| || | ||||||||||||||||||||||||    
T  12092772 aatggactaagccactatccatgatagtttaagggaagagaggaaaatttcgccttcaaccacatgaa 12092705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 4998075 - 4998103
Alignment:
Q  192 tgttatttctttctttccagattttccat 220  Q
    |||||||||||||||||||||||||||||    
T  4998075 tgttatttctttctttccagattttccat 4998103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 42017907 - 42017819
Alignment:
Q  38 tattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacat 126  Q
    |||||| |||||| ||| || ||||| ||||||| |||||| |||||||| ||||| |  ||   ||||| ||||||||||||||||||    
T  42017907 tattagcctatgcccaacatagtgaacggactaagccaccatccatgatagttgaaagagagcttaggaagtttcgccttcaaccacat 42017819  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 39840059 - 39839933
Alignment:
Q  3 aaaacaaaaagcagtaactaaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtga 102  Q
    |||||||||| |||||||| |||||| | | |||| ||||  |||| | ||| || ||||| ||||||| ||||||||||||||| || || ||||| ||    
T  39840059 aaaacaaaaaacagtaacttaagaaaaccactaacaattaacctatacacaacatggtgaagggactaagccaccaaccatgatagttaaagggaagaga 39839960  T
Q  103 aggaaatttcgccttcaaccacatgaa 129  Q
     ||||| |||| |||||||||||||||    
T  39839959 tggaaacttcgtcttcaaccacatgaa 39839933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 19314975 - 19315100
Alignment:
Q  31 aaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaa 130  Q
    ||||||||||||| ||||||  |  || || || || |||| ||||||||||||||||||  | |||| | ||| ||||||||||||||||||||| ||     
T  19314975 aaataactattagcctatgcctagcatggtaaacgggctaagccaccaaccatgataattccagggaaataaagcaaatttcgccttcaaccacataaat 19315074  T
Q  131 atgagtggcttaattttatcaaccac 156  Q
     |||||| |||||| |||||||||||    
T  19315075 gtgagtgacttaatcttatcaaccac 19315100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 26778725 - 26778789
Alignment:
Q  65 ggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaa 129  Q
    ||||||||||||||||||||||||||||| | ||| |||  ||||||| ||||||||||||||||    
T  26778725 ggactaaaccaccaaccatgataattgaaggaaagagaaaaaaatttcaccttcaaccacatgaa 26778789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 32252085 - 32252026
Alignment:
Q  192 tgttatttctttctttccagattttccatgttgttgcaaaccaaataacatgtaaaattg 251  Q
    |||| |||||||||||||| | || |||||||||||| ||||||||||| ||||||||||    
T  32252085 tgttgtttctttctttccataattcccatgttgttgcgaaccaaataacctgtaaaattg 32252026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 12831489 - 12831610
Alignment:
Q  35 aactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatga 134  Q
    ||||||||  |||||| ||| || ||||| ||||||| ||||||||||||| ||||||| ||||| |    ||||||| ||||||||||||| |||  ||    
T  12831489 aactattaacctatgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccacataaaagaga 12831588  T
Q  135 gtggcttaattttatcaaccac 156  Q
      | |||||| |||||||||||    
T  12831589 tcgacttaatcttatcaaccac 12831610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 12863464 - 12863585
Alignment:
Q  35 aactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacatgaaaatga 134  Q
    ||||||||  |||||| ||| || ||||| ||||||| ||||||||||||| ||||||| ||||| |    ||||||| ||||||||||||| |||  ||    
T  12863464 aactattaacctatgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccacataaaagaga 12863563  T
Q  135 gtggcttaattttatcaaccac 156  Q
      | |||||| |||||||||||    
T  12863564 tggacttaatcttatcaaccac 12863585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 18967949 - 18967885
Alignment:
Q  62 aatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccacat 126  Q
    |||||||||| ||| || ||||||| ||| || ||||| |||| |||||||||||||||||||||    
T  18967949 aatggactaagccatcatccatgatcattaaatggaagagaagcaaatttcgccttcaaccacat 18967885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 29994703 - 29994652
Alignment:
Q  73 ccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    ||||||||||||||||||||| |||||  ||||||| ||| |||||||||||    
T  29994703 ccaccaaccatgataattgaagggaagaaaaggaaacttcaccttcaaccac 29994652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 27482647 - 27482713
Alignment:
Q  35 aactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtg 101  Q
    |||| |||| |||||| ||| || ||||| ||||||| |||||| |||||||||||||| |||||||    
T  27482647 aactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtg 27482713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 16610691 - 16610602
Alignment:
Q  35 aactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaaccac 124  Q
    ||||||||| | ||||  ||||| || || ||||||| |||||| |||||||||||||| ||||| |||  ||| |||| ||||||||||    
T  16610691 aactattagccaatgcctaaaatggtaaacggactaagccaccacccatgataattgaagggaagagaaacaaacttcgtcttcaaccac 16610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 11305955 - 11305849
Alignment:
Q  22 aaagaaagcaaataactattagtctatgctcaaaattgtgaatggactaaaccaccaaccatgataattgaacggaagtgaaggaaatttcgccttcaac 121  Q
    |||||||| ||||||| ||||| |||||| ||| ||  |||||||||||| ||||||| |||| || ||||| || ||   ||||| |||||||||||||    
T  11305955 aaagaaag-aaataac-attagcctatgcccaacatattgaatggactaagccaccaaacatggtagttgaaggggagattaggaattttcgccttcaac 11305858  T
Q  122 cacatgaaa 130  Q
    |||| ||||    
T  11305857 cacaagaaa 11305849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 25942615 - 25942655
Alignment:
Q  59 gtgaatggactaaaccaccaaccatgataattgaacggaag 99  Q
    ||||| ||||||| ||||||||||| |||||||||||||||    
T  25942615 gtgaacggactaagccaccaaccataataattgaacggaag 25942655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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