View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_20 (Length: 284)
Name: NF4215_low_20
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 50012354 - 50012110
Alignment:
| Q |
13 |
gagagaagaagtgaatgcacataattagatgaagttgatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatt |
112 |
Q |
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| T |
50012354 |
gagagaagaagtgaatgcacataattagatgaagttgatattacagggatgaacattttgatttaacttgctcaaaaatatattgaagttgctcaaaatt |
50012255 |
T |
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| Q |
113 |
tcaatctttatttnnnnnnnnnnnnnnnnnnnntcaatctttaatatttgaaaaacacttgcccacgttacattagaaagaagaacatgtgtatttctta |
212 |
Q |
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| T |
50012254 |
tcaatctttatttaaaaaaagaagaaaaaaaaatcaatctttaatatttggaaaacacttgcccacgttacattagaaagaagaacatatgtatttctta |
50012155 |
T |
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| Q |
213 |
agctcttttagagagggaggaatgaaaaagaaatataaacaggtt |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50012154 |
agctcttttagagagggaggaatgaaaaagaaatataaacaggtt |
50012110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 42066530 - 42066288
Alignment:
| Q |
13 |
gagagaagaagtgaatgcacataattagatgaagttgatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42066530 |
gagagaagaagtgaatgcacataattagatgaagttgatattacatggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatt |
42066431 |
T |
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| Q |
113 |
tcaatctttattt-nnnnnnnnnnnnnnnnnnnntcaatctttaatatttgaaaaacacttgcccacgttacattagaaagaagaacatgtgtatttctt |
211 |
Q |
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| T |
42066430 |
tcaatctttatttaaaaaaagaagaaaaaaaaaatcaatctttaatatttggaaaacatttgcccacgttacattagaaagaagaacatgtgtatttctt |
42066331 |
T |
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| Q |
212 |
aagctcttttagagagggaggaatgaaaaagaaatataaacag |
254 |
Q |
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| T |
42066330 |
aagctcttttagagagggaggaatgaaaaagaaatataaacag |
42066288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 21444104 - 21444345
Alignment:
| Q |
13 |
gagagaagaagtgaatgcacataattagatgaagttgatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatt |
112 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21444104 |
gagagaagaagtgaatgcagataattagatgaagttgatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatt |
21444203 |
T |
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| Q |
113 |
tcaatctttatttnnnnnnnnnnnnnnnnnnnntcaatctttaatatttgaaaaacacttgcccacgttacattagaaagaagaacatgtgtatttctta |
212 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
21444204 |
tcaatctttattt---aaaaaaagaaaaaaaaatcaatctttaatatttggaaaacacttgcccacgttacttcagaaagaagaacatgtgtatttctta |
21444300 |
T |
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| Q |
213 |
agctcttttagagagggaggaatgaaaaagaaatataaacaggtt |
257 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21444301 |
agctcttttagagagagaggaatgaaaaagaaatataaacaggtt |
21444345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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