View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_22 (Length: 252)
Name: NF4215_low_22
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 44690817 - 44690582
Alignment:
| Q |
4 |
gcagcaacagcttacccctccacacctcaccctcttatatcacaatttgagaacaaattgcaaagattgaagagttccgtaggtgactcttcagcttcat |
103 |
Q |
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| T |
44690817 |
gcagcaacagcttacccctccacacctcaccctcttatatcacaatttgagaacaaattgcaaagattgaagagttccgtaggtgactcttcagcttcat |
44690718 |
T |
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| Q |
104 |
catctttggtattgaacaaacttaatggtatgcagg---atttgcttgactgcatcgataagttccttcaatttccaattgaacaacaagccttagcaca |
200 |
Q |
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| T |
44690717 |
catctttggtatgcaacaaacttaacggtatgcaggataatttgcttgactgcatcgataagttccttcaatttccaattgaacaacaagccttagcaca |
44690618 |
T |
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| Q |
201 |
aaagcgcaatgaaaaatgtgttgatgacatactaga |
236 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
44690617 |
aaagtgcaatgaaaaatgtgttgatgacatactaga |
44690582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 26567932 - 26567701
Alignment:
| Q |
4 |
gcagcaacagcttacccctccacacctcaccctcttatatcacaatttgagaacaaattgcaaagattgaagagttccgtaggtgactcttcagcttcat |
103 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||| ||||||||||| | |||||||||||||| |||| |
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| T |
26567932 |
gcagcaacagcttaccc-tccacacctcaccctcttatatcatattttgagaacaatttgcaaatattgaagagttatgaaggtgactcttcagtgtcat |
26567834 |
T |
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| Q |
104 |
catctttggtattgaacaaacttaatggtatgcaggatttgcttgactgcatcgataagttccttcaatttccaattgaacaacaagccttagcacaaaa |
203 |
Q |
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| T |
26567833 |
catcttcggtatgcaacaaccttaatggcatgcaggatttgcatgactgcatcgataagttccttcaaatgccaattgaacaacaagccttatcacagga |
26567734 |
T |
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| Q |
204 |
gcgcaatgaaaaatgtgttgatgacatactaga |
236 |
Q |
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| T |
26567733 |
atgcaatgaaaaatgtgtcgatgacctactaga |
26567701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 26570664 - 26570433
Alignment:
| Q |
4 |
gcagcaacagcttacccctccacacctcaccctcttatatcacaatttgagaacaaattgcaaagattgaagagttccgtaggtgactcttcagcttcat |
103 |
Q |
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|||||||||| |||||| ||| | |||||||||||| |||||||||||||| |||| ||| ||| |||||| | ||| | ||| | ||||| |||| |
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| T |
26570664 |
gcagcaacagtttaccc-tcctctcctcaccctcttgtatcacaatttgaggacaatttgaaaatattgaataattctgaaggcaccacttcattgtcat |
26570566 |
T |
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| Q |
104 |
catctttggtattgaacaaacttaatggtatgcaggatttgcttgactgcatcgataagttccttcaatttccaattgaacaacaagccttagcacaaaa |
203 |
Q |
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| T |
26570565 |
catcatcggtatgcaacaaacttaatggaatgcaggatttgaatgactgcattggtaagttacttcaattgccaactgaacaacaagccttatcacgaga |
26570466 |
T |
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| Q |
204 |
gcgcaatgaaaaatgtgttgatgacatactaga |
236 |
Q |
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||||||||| || ||| ||||| ||||||| |
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| T |
26570465 |
atgcaatgaaagatcggttaatgacctactaga |
26570433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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