View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_27 (Length: 249)
Name: NF4215_low_27
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 44690814 - 44691051
Alignment:
| Q |
1 |
ctgcgaatatgcagagatctctttatatttgtttctatgactgccattgttttcttagagaaaagaagcttagtgtttggatttttcatttcatatatag |
100 |
Q |
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| T |
44690814 |
ctgcggatatgcagagatctctttatatttgtttctatgactgccattgttttcttagagaaaagaagcttagtgtttggatttttcatttcatatatag |
44690913 |
T |
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| Q |
101 |
caaa-gaagtaaccaattatgggagacaagaagaatatttatgttcctcgaatgtcacctatccgtacgcaattatatcatcttgatttggatcttagct |
199 |
Q |
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| T |
44690914 |
caaaagaagtaaccaattatgggagacaagaagaatatttatgttcctcgaatgtcacctatccgtacgcaattatatcatcttgatttggatcttagct |
44691013 |
T |
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| Q |
200 |
acctcaccattatttgttaatgttcctcatgcatgatg |
237 |
Q |
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| T |
44691014 |
acctcaccattatttgttaatgttcctcatgcatgatg |
44691051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 26568040 - 26568174
Alignment:
| Q |
71 |
tagtgtttggatttttcatttcatatatagcaaagaagt-aaccaattatgggagacaagaagaatatttatgttcctcgaatgtcacct-atccgtacg |
168 |
Q |
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| T |
26568040 |
tagtggtttgatttttcacttcatatatagtaaaaaaattaaccaattaaggaagacaagaagaatattgttgttcctcaaatgtcacctaatctgtatg |
26568139 |
T |
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| Q |
169 |
caattatatcatcttgatttggatcttagctacct |
203 |
Q |
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| T |
26568140 |
caattatataatcttgatttggatcttagctacct |
26568174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 26570786 - 26570907
Alignment:
| Q |
90 |
ttcatatatagcaaagaa-gtaaccaattatgggagacaagaagaatatttatgttcctcgaatgtcaccta-tccgtacgcaattatatcatcttgatt |
187 |
Q |
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||||||||||||||| || |||||| ||| ||||||||| | |||||||| |||||||| | ||||||||| | ||| | ||||||||| |||||||| |
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| T |
26570786 |
ttcatatatagcaaacaaagtaaccgattgagggagacaaaacgaatatttgtgttcctcaagtgtcacctaattagtatgaaattatatcttcttgatt |
26570885 |
T |
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| Q |
188 |
tggatcttagctacctcaccat |
209 |
Q |
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|| |||| |||||||||||||| |
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| T |
26570886 |
tgaatctcagctacctcaccat |
26570907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26567929 - 26567984
Alignment:
| Q |
1 |
ctgcgaatatgcagagatctctttatatttgtttctatgactgccattgttttctt |
56 |
Q |
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| T |
26567929 |
ctgcgaatatgaagagagctctttatatttgtttcattgactgccatttttttctt |
26567984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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