View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_3 (Length: 706)
Name: NF4215_low_3
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 3465110 - 3464650
Alignment:
| Q |
18 |
attgaatgatcttgaatcatatctagttgatgattggaatcagattgagatttcatgtgacaaaataattggaccatcaaatgtaactataagctggtgt |
117 |
Q |
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| T |
3465110 |
attgaatgatcttgaatcatatctggttgatgattggaatcagattgagatttcatgtgacaaaataattggaccatcaaatgtaactataagctggtgt |
3465011 |
T |
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| Q |
118 |
ggagttcatatatgtagggaagaagctaacatggaggatattctatttaaagatcctgatcttgatttagattcaagcagagaaactgagaagattgatt |
217 |
Q |
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| T |
3465010 |
ggagttcatatatgtagggaagaagataacatggaggatattctatttaaagatcctgatcttgatttagattcaagcagagaaactgagaagattgatt |
3464911 |
T |
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| Q |
218 |
ctgatttggataaaaacaatgatgcaagaataaagtcaattggagatttcaaaaatagcaaaaaagataatgatttctactgtttcaagaacttggaaga |
317 |
Q |
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| T |
3464910 |
ctgatttggataaaaacaatgatgcaagaataaagtcaattggagatttcaaaaatagcaaaaaagataatgatttctactgtttcaagaacttggaaga |
3464811 |
T |
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| Q |
318 |
ttataatattgctgcaagtcacccagagatggatcataatcaagataaacttttattgcatccaaaaacattggatagtgttactaatgattcaatgcct |
417 |
Q |
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| T |
3464810 |
ttataataatgctgcaagtcacacagagatggatcataatcaagataaacttttattgcatccaaaaacattggatagtgttactaatgattcaatgcct |
3464711 |
T |
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| Q |
418 |
ttagtatgttttggaggcaagaatgttgtcgaaggtacgcatcagttctatatgcatatgc |
478 |
Q |
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| T |
3464710 |
ttagtatgttttggaggcaagaatgttgtcgaaggtacgcatcagttctatatgcatatgc |
3464650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 533 - 696
Target Start/End: Complemental strand, 3464595 - 3464432
Alignment:
| Q |
533 |
cgctgtggatcgaactcatatacactgttggcgtaatgannnnnnngtcaataaatagtaatcgtttgaccattcatgtctatttctaaatgacacataa |
632 |
Q |
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| T |
3464595 |
cgctgtggatcgaactcatatacactgttggcgtaatgatttttttgtcaataaatcgtaatcgtttgaccattcatgtctatttctaaatgacacataa |
3464496 |
T |
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| Q |
633 |
ttggttgggatttgttgacagtgtaaattttttatatgtatcaatttgccttgtcggttctgtg |
696 |
Q |
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| T |
3464495 |
ttggttgggatttgttgacagtgtaaattttttatatgtatcaattttccttgtcggttttgtg |
3464432 |
T |
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