View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4215_low_31 (Length: 240)

Name: NF4215_low_31
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4215_low_31
NF4215_low_31
[»] chr1 (8 HSPs)
chr1 (12-240)||(28909929-28910170)
chr1 (157-208)||(48830124-48830175)
chr1 (135-173)||(26779951-26779989)
chr1 (153-202)||(4078193-4078242)
chr1 (135-208)||(7218100-7218173)
chr1 (157-210)||(19462814-19462867)
chr1 (135-172)||(34290243-34290280)
chr1 (153-217)||(45205029-45205094)
[»] chr4 (2 HSPs)
chr4 (151-240)||(53155202-53155291)
chr4 (135-180)||(28423529-28423574)
[»] chr7 (6 HSPs)
chr7 (133-208)||(17989047-17989122)
chr7 (153-208)||(47004058-47004113)
chr7 (158-208)||(2727409-2727459)
chr7 (159-215)||(9527140-9527197)
chr7 (135-172)||(12110367-12110404)
chr7 (135-179)||(28691861-28691905)
[»] chr3 (3 HSPs)
chr3 (135-209)||(35394524-35394598)
chr3 (156-215)||(2321138-2321198)
chr3 (157-215)||(24235731-24235790)
[»] chr6 (4 HSPs)
chr6 (153-208)||(1402967-1403022)
chr6 (159-240)||(2514639-2514722)
chr6 (135-172)||(34430487-34430524)
chr6 (135-179)||(26694878-26694922)
[»] chr5 (3 HSPs)
chr5 (63-122)||(3290733-3290792)
chr5 (157-239)||(18704084-18704167)
chr5 (135-218)||(34205199-34205284)
[»] chr8 (4 HSPs)
chr8 (153-240)||(35298521-35298611)
chr8 (135-205)||(42370387-42370457)
chr8 (156-208)||(27728068-27728120)
chr8 (156-208)||(29973052-29973104)
[»] chr2 (4 HSPs)
chr2 (135-216)||(36863651-36863733)
chr2 (53-93)||(37419594-37419634)
chr2 (157-215)||(13736341-13736399)
chr2 (135-208)||(11513869-11513942)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 28910170 - 28909929
Alignment:
Q  12 catcatcatggctctcttatctttttaggctatgtttagatttgacttgtatgagtttatctacttatataagcacttgtgagttgtgaaactg---ttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||   |||    
T  28910170 catcatcatggctctcttatctttttaggctatgtttagatt-gatttgtatgagtttatctacttatataagcacttgtgagttgtgagactgctgttt 28910072  T
Q  109 gttagatcttatgacttgtttatatgtt-----------attttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtt 197  Q
    |||||||||||||||||||||||| |||           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28910071 gttagatcttatgacttgtttataagttgttttcatcttattttcataacttcttcatgctagcttatgaaaacaatgtatagttgatattaaaatagtt 28909972  T
Q  198 tgactttatttatcttttattctgaaattgcttatacataagc 240  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28909971 tgactttatttatcttttattctgaaattgcttatacataagc 28909929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 48830124 - 48830175
Alignment:
Q  157 atagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 208  Q
    |||||||||||||||| | ||||| | |||| ||||||||||||||||||||    
T  48830124 atagcttatgaaaacagtttatagcttatatgaaaatagtttgactttattt 48830175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 26779951 - 26779989
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaacaa 173  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  26779951 ttattttcataagttcttcaagatagcttatgaaaacaa 26779989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 4078193 - 4078242
Alignment:
Q  153 catgatagcttatgaaaacaatgtatagttgatattaaaatagtttgact 202  Q
    |||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  4078193 catgatagcttatgaaaacaacttatagattatatgaaaatagtttgact 4078242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 7218100 - 7218173
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 208  Q
    |||||||||||| |||| || ||||| ||||||||||||  ||||| | |||| |||| | |||||||||||||    
T  7218100 ttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 7218173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 19462814 - 19462867
Alignment:
Q  157 atagcttatgaaaacaatgtatagttgatattaaaatagtttgactttatttat 210  Q
    |||||||||||||||||| || |||| |||| ||||  ||||||||||||||||    
T  19462814 atagcttatgaaaacaatttacagtttatatgaaaactgtttgactttatttat 19462867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 34290280 - 34290243
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaaca 172  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  34290280 ttattttcataagttcttcaagatagcttatgaaaaca 34290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 45205094 - 45205029
Alignment:
Q  153 catgatagcttatgaaaacaatgtatagttgatattaaaatagtttgacttta-tttatcttttat 217  Q
    |||||||||||||||||||||  | ||| | ||||  |||||||||||||||| ||||||||||||    
T  45205094 catgatagcttatgaaaacaacttctagcttatatggaaatagtttgactttattttatcttttat 45205029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 53155291 - 53155202
Alignment:
Q  151 ttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttatttatcttttattctgaaattgcttatacataagc 240  Q
    |||||||||||||||||||| | | |||||   |||| ||||||||| ||||||||||||||||| || | |||| ||||||||||||||    
T  53155291 ttcatgatagcttatgaaaatagtttatagcatatatgaaaatagttcgactttatttatcttttgttataaaatagcttatacataagc 53155202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 28423574 - 28423529
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaacaatgtatag 180  Q
    ||||||||||||  ||| |||||||||||| |||||||||||||||    
T  28423574 ttattttcataaactctacatgatagcttaggaaaacaatgtatag 28423529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 17989047 - 17989122
Alignment:
Q  133 tgttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 208  Q
    ||||||||||||||  |||||| || |||||||||||||||  ||||||| |||| |||| |||||||||||||||    
T  17989047 tgttattttcataagctcttcaggagagcttatgaaaacaaattatagtttatatgaaaacagtttgactttattt 17989122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 47004113 - 47004058
Alignment:
Q  153 catgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 208  Q
    |||| |||||||||||||||   ||||||| |||| ||||||||||||||||||||    
T  47004113 catggtagcttatgaaaacagcttatagttcatataaaaatagtttgactttattt 47004058  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 2727409 - 2727459
Alignment:
Q  158 tagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 208  Q
    |||||||| |||||||| |||||||||||| |||| |||||| ||||||||    
T  2727409 tagcttataaaaacaatttatagttgatatgaaaagagtttgcctttattt 2727459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 9527140 - 9527197
Alignment:
Q  159 agcttatgaaaacaatgtatagttgatattaaaatagtttgactttatt-tatctttt 215  Q
    |||||||||||||||  ||||||| |||| |||| |||||||||||||| ||||||||    
T  9527140 agcttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatctttt 9527197  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 12110404 - 12110367
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaaca 172  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  12110404 ttattttcataagttcttcaagatagcttatgaaaaca 12110367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 28691861 - 28691905
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaacaatgtata 179  Q
    ||||||||||||  ||| || ||||||||||||||||||||||||    
T  28691861 ttattttcataagatctccaggatagcttatgaaaacaatgtata 28691905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 35394524 - 35394598
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattta 209  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||| ||||||| ||||   ||| ||||||||||    
T  35394524 ttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaaccatttcactttattta 35394598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 2321198 - 2321138
Alignment:
Q  156 gatagcttatgaaaa-caatgtatagttgatattaaaatagtttgactttatttatctttt 215  Q
    ||||||||||||||| |||  | ||||| |||| |||||||||||||||||||||||||||    
T  2321198 gatagcttatgaaaaacaagatctagtttatatgaaaatagtttgactttatttatctttt 2321138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 24235731 - 24235790
Alignment:
Q  157 atagcttatgaaaacaatgtatagttgatattaaaatagtttgactttat-ttatctttt 215  Q
    |||||||||||||||||  ||||| | ||||| ||||||||||||||||| |||||||||    
T  24235731 atagcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatctttt 24235790  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 1403022 - 1402967
Alignment:
Q  153 catgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 208  Q
    |||||||||||||||||||||| ||||| | |||| |||||||||| |||||||||    
T  1403022 catgatagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattt 1402967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 2514722 - 2514639
Alignment:
Q  159 agcttatgaaaacaatgtatagttgatattaaaatagtttgacttta-tttatcttttattct-gaaattgcttatacataagc 240  Q
    |||||||||||| ||  ||||| | |||| ||| ||||||||||||| ||||||||||||| | ||||| ||||||||||||||    
T  2514722 agcttatgaaaataacttatagctcatataaaattagtttgactttattttatcttttattatagaaatagcttatacataagc 2514639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 34430487 - 34430524
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaaca 172  Q
    ||||||||||||||||| || |||||||||||||||||    
T  34430487 ttattttcataacttctccaagatagcttatgaaaaca 34430524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 26694922 - 26694878
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaacaatgtata 179  Q
    |||||||||||| ||||||| ||||| ||||||||||||| ||||    
T  26694922 ttattttcataagttcttcaagatagtttatgaaaacaatttata 26694878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 3290733 - 3290792
Alignment:
Q  63 tgagtttatctacttatataagcacttgtgagttgtgaaactgtttgttagatcttatga 122  Q
    |||||||| |||||  ||||||||||||||| ||||||||||||||| |||| |||||||    
T  3290733 tgagtttacctactagtataagcacttgtgaattgtgaaactgtttgatagaacttatga 3290792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 18704084 - 18704167
Alignment:
Q  157 atagcttatgaaaacaatgtatagttgatattaaaatagtttgactttatttatcttttattct-gaaattgcttatacataag 239  Q
    |||||||||||||||||  ||||| | |||| ||||||| ||||||||||||||||||| || | |||||  ||||||||||||    
T  18704084 atagcttatgaaaacaacttatagcttatataaaaatagcttgactttatttatcttttgttatagaaataacttatacataag 18704167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 34205284 - 34205199
Alignment:
Q  135 ttattttcataa-cttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgacttta-tttatcttttatt 218  Q
    |||||| ||||| ||| |||| ||||||||||||||||||  ||||| | |||| |||||| |||||||||| |||||| ||||||    
T  34205284 ttatttccataagctttttcaagatagcttatgaaaacaacttatagcttatataaaaataatttgactttactttatcctttatt 34205199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 35298521 - 35298611
Alignment:
Q  153 catgatagcttatgaaaacaatgtatagttgatatt-aaaatagtttgacttta-tttatcttttatt-ctgaaattgcttatacataagc 240  Q
    |||||||||||||||||||||  ||||||| ||||| ||||  ||||| ||||| |||||||||| || ||||||| ||||||||||||||    
T  35298521 catgatagcttatgaaaacaacttatagtttatattgaaaactgtttggctttattttatcttttgttactgaaatagcttatacataagc 35298611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 42370387 - 42370457
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgacttta 205  Q
    |||||| |||||  ||||||||||||||||||| |||| | ||||| | |||  |||||||||||||||||    
T  42370387 ttatttccataaactcttcatgatagcttatgagaacagtttatagctcataaaaaaatagtttgacttta 42370457  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 27728068 - 27728120
Alignment:
Q  156 gatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 208  Q
    ||||||||||||||||||   ||| || |||| ||||||||||||||||||||    
T  27728068 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattt 27728120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 29973104 - 29973052
Alignment:
Q  156 gatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 208  Q
    ||||||||||||||||||  ||||| | || | ||||||||||||||||||||    
T  29973104 gatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattt 29973052  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 36863651 - 36863733
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgacttta-tttatctttta 216  Q
    ||||||||||||  ||| || ||||||||||||||||||| ||||  | |||| ||||| ||||||||||| |||||||||||    
T  36863651 ttattttcataagctctccaagatagcttatgaaaacaatttataacttatataaaaattgtttgactttattttatctttta 36863733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 37419594 - 37419634
Alignment:
Q  53 ttgacttgtatgagtttatctacttatataagcacttgtga 93  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  37419594 ttgacttatttgagtttatctacttatataagcacttgtga 37419634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 13736341 - 13736399
Alignment:
Q  157 atagcttatgaaaacaatgtatagttgatattaaaatagtttgactttatttatctttt 215  Q
    ||||||||||||||||   ||||| |||| | ||||||||||||||| |||||||||||    
T  13736341 atagcttatgaaaacagcttatagctgatgtgaaaatagtttgacttcatttatctttt 13736399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 11513942 - 11513869
Alignment:
Q  135 ttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 208  Q
    |||||| || || |||| |||||||||||||||||||||  ||||| | |||| |||| | |||||||||||||    
T  11513942 ttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 11513869  T

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