View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_33 (Length: 239)
Name: NF4215_low_33
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32896249 - 32896029
Alignment:
| Q |
1 |
ccttaccagctaaagatacttgctatattctgcattcttctacgtctccgtctccgctattgtactgccttttaactttggtcttgatatcaacctcttt |
100 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32896249 |
ccttaccagctaaggatgcttgctatattctgcattcttctacgtctccgtctccactattgtactgccttttaactttggtcttgatatcaacatcttt |
32896150 |
T |
|
| Q |
101 |
gtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagatttgatgagaagcaagttacttttcgaag |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896149 |
gtcaccttctttaccccacagcaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagatttgatgagaagcaagttacttttcgaag |
32896050 |
T |
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| Q |
201 |
aaaaacgtgaccactaactac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
32896049 |
aaaaacgtgaccactaactac |
32896029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 32919604 - 32919503
Alignment:
| Q |
78 |
ttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagatttgat |
177 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| || |
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| T |
32919604 |
ttggtcttgaaatcaacatctttgtcaccttctttaccccacagcaacaaatatagacccacgatgacaataaaaccacctatgatgctgaaaatttaat |
32919505 |
T |
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| Q |
178 |
ga |
179 |
Q |
| |
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|| |
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| T |
32919504 |
ga |
32919503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 32885509 - 32885359
Alignment:
| Q |
21 |
tgctatattctgcattcttctacgtctccgtctccgctattgtactgccttttaactttggtcttgatatcaacctctttgtcaccttctttaccccaca |
120 |
Q |
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| T |
32885509 |
tgctatattcaacattcttctaagcctccttctccatttttgtactgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccaca |
32885410 |
T |
|
| Q |
121 |
gtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaaga |
171 |
Q |
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| |||| ||| | ||||||||| |||||||| ||||||||||||| |||| |
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| T |
32885409 |
gcaacagatacaaacccatgatcacaataaatgcacctatgatgctaaaga |
32885359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 19503529 - 19503637
Alignment:
| Q |
71 |
tttaactttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaag |
170 |
Q |
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|||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||| |||| || |||||||| |
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| T |
19503529 |
tttacctttggtcttgaaatcaacctctctgtcaccttctttcccccacagtaacaagtatagtcccatgatgacaataagtgcaccgatcatgctgaaa |
19503628 |
T |
|
| Q |
171 |
atttgatga |
179 |
Q |
| |
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|||| |||| |
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| T |
19503629 |
attttatga |
19503637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 32935838 - 32935747
Alignment:
| Q |
78 |
ttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaa |
169 |
Q |
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|||||||| | ||||| |||||||||||||||||| |||||||| |||||||| | |||||||||||||||||| ||||||||| |||||| |
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| T |
32935838 |
ttggtcttcaaatcaatctctttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacaataaatgcacctatgaggctgaa |
32935747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 32953234 - 32953136
Alignment:
| Q |
76 |
ctttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagattt |
174 |
Q |
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|||||||||||| ||| ||| |||||||||||||||| |||||||| |||||||| | |||||||||||| ||||| ||||||| |||||||| |||| |
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| T |
32953234 |
ctttggtcttgaaatcgaccactttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacgataaatgcacctataatgctgaaaattt |
32953136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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