View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_34 (Length: 230)
Name: NF4215_low_34
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 24641848 - 24642040
Alignment:
| Q |
20 |
agatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtgga |
119 |
Q |
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| T |
24641848 |
agatctgagaaaggattatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtgga |
24641947 |
T |
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| Q |
120 |
tgaaactgcgtgacaacataaagatgtcaaaaacagtaacatagttggggatagtggtttaaatgggttattgtttatagcttcatacttagt |
212 |
Q |
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| T |
24641948 |
tgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttagt |
24642040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 24693221 - 24693409
Alignment:
| Q |
24 |
ctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaa |
123 |
Q |
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| T |
24693221 |
ctgagagaggataatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaa |
24693320 |
T |
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| Q |
124 |
actgcgtgacaacataaagatgtcaaaaacagtaacatagttggggatagtggtttaaatgggttattgtttatagcttcatacttagt |
212 |
Q |
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| T |
24693321 |
actgcgtgacaacatagagatgtcaaaaacagcaacatagttggagatagtggtttaaatgggttagtgtttaaagcttcatacttagt |
24693409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 24720744 - 24720867
Alignment:
| Q |
1 |
atgataaaccaattcctccagatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgaca |
100 |
Q |
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| T |
24720744 |
atgataaaccaattcctccagatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctggca |
24720843 |
T |
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| Q |
101 |
agctcatatcagctgtggatgaaa |
124 |
Q |
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| T |
24720844 |
agctcatatcagctgtggatgaaa |
24720867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 24733406 - 24733275
Alignment:
| Q |
58 |
ccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacataaagatgtcaaaaacagta |
157 |
Q |
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| T |
24733406 |
ccaacaacaccagaaatgtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaactgtgtgacaacatagagatgtcaaaaacagca |
24733307 |
T |
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| Q |
158 |
acatagttggggatagtggtttaaatgggtta |
189 |
Q |
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| T |
24733306 |
acaaagttggggatgatggttgaaatgggtta |
24733275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 24648653 - 24648791
Alignment:
| Q |
58 |
ccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacataaagatgtcaaaaacagta |
157 |
Q |
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| T |
24648653 |
ccaacaacaccggagatatgaaagatatatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagta |
24648752 |
T |
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| Q |
158 |
acatagttggggatagtggtttaaatgggttattgttta |
196 |
Q |
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| T |
24648753 |
gcattgttatgggtggtggttggaatgggttagtgttta |
24648791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 24656401 - 24656536
Alignment:
| Q |
37 |
atccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaac |
136 |
Q |
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| T |
24656401 |
atccaaagaagtgtctcacatccaataacaccagaaaagtgaaatatgaacatagtagttaggaagctcatgtcagccatggttgcaactgcatgacaaa |
24656500 |
T |
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| Q |
137 |
ataaagatgtcaaaaacagtaacatagttggggata |
172 |
Q |
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|| || ||||||||||| |||||| |||||||| |
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| T |
24656501 |
atctagcagtcaaaaacagcaacataagtggggata |
24656536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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