View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_35 (Length: 230)
Name: NF4215_low_35
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 45692943 - 45693149
Alignment:
| Q |
10 |
agagaagaatgagaactttctctagaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtattt |
109 |
Q |
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| T |
45692943 |
agagaagaatgagaactttttctagaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtattt |
45693042 |
T |
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| Q |
110 |
cttgataagattccttccccaaatgaagagaaacaatggtagacaagtcatttgaatcgtaatatgtcaaccaattaactgtgccacttatgaatattcc |
209 |
Q |
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| T |
45693043 |
cttgataagattccttccccaaatgaagagaaacaatggtagacaagtcatttgaatcgtaatatgtcaaccaattaactgtgccacttatgaatattcc |
45693142 |
T |
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| Q |
210 |
caggtga |
216 |
Q |
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|| |||| |
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| T |
45693143 |
catgtga |
45693149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 24233489 - 24233652
Alignment:
| Q |
33 |
agaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtatttcttgataagattccttccccaaa |
132 |
Q |
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| T |
24233489 |
agaaaatatgcacaagcactccctcatcatatccaaagtcgacaaaaaaaaatctccagaatcaggaactggtatttcttgataagattccttccccaaa |
24233588 |
T |
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| Q |
133 |
tgaagagaaacaatggtagacaagtcatttgaatcgtaatatgtcaaccaattaactgtgccac |
196 |
Q |
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| T |
24233589 |
tgaagagaaacaatgacacccaagtcacttgagttataataagtcaaccaattcactgtgccac |
24233652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 24242927 - 24243043
Alignment:
| Q |
33 |
agaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtatttcttgataagattccttccccaaa |
132 |
Q |
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| T |
24242927 |
agaaaataggcacaagaaatcccgcatcacacccatggtcaacctaacaaaatctccataatcaggctgtgaaatatcttggtaagattctttccccaaa |
24243026 |
T |
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| Q |
133 |
tgaagagaaacaatggt |
149 |
Q |
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| T |
24243027 |
tcaagagaaacaatggt |
24243043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 25611036 - 25611164
Alignment:
| Q |
33 |
agaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtatttcttgataagattccttccccaaa |
132 |
Q |
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||||||||||||||| || || ||||| ||||||||| |||| | |||||||| |||| |||||| || ||||||| ||||||||| ||||| ||| |
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| T |
25611036 |
agaaaatatgcacaaacaatctctcatcacacccaagttcaatttctcaaaattcccatgatcaggatgcgaaatttcttcataagattctttccctaaa |
25611135 |
T |
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| Q |
133 |
tgaagagaaacaatggtagacaagtcatt |
161 |
Q |
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|||||||||||||||| | ||||| |||| |
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| T |
25611136 |
tgaagagaaacaatggcatacaagccatt |
25611164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 25478770 - 25478731
Alignment:
| Q |
109 |
tcttgataagattccttccccaaatgaagagaaacaatgg |
148 |
Q |
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| T |
25478770 |
tcttgataagactctttccccaaatgaagagaaacaatgg |
25478731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 1421236 - 1421360
Alignment:
| Q |
24 |
actttctctagaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtatttcttgataagattcc |
123 |
Q |
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|||||||| |||||| ||||||||||| |||||||| ||||||||||| ||| ||| | ||||||||||| ||| |||||| ||||||||||||||| |
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| T |
1421236 |
actttctcgagaaaaaatgcacaagcaatccctcatcacacccaaggttaacttattcagatttccataatgaggttgcggtatctcttgataagattcc |
1421335 |
T |
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| Q |
124 |
ttccccaaatgaagagaaacaatgg |
148 |
Q |
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||||||||||||||||||||||||| |
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| T |
1421336 |
ttccccaaatgaagagaaacaatgg |
1421360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 1421391 - 1421430
Alignment:
| Q |
170 |
aatatgtcaaccaattaactgtgccacttatgaatattcc |
209 |
Q |
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| T |
1421391 |
aatatgtcaaccaattaaccgtgccacttacgaatattcc |
1421430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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