View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4215_low_4 (Length: 690)

Name: NF4215_low_4
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4215_low_4
NF4215_low_4
[»] chr5 (4 HSPs)
chr5 (17-63)||(11038907-11038953)
chr5 (398-432)||(35569089-35569123)
chr5 (398-441)||(38972210-38972253)
chr5 (398-440)||(27587816-27587858)
[»] chr3 (2 HSPs)
chr3 (398-441)||(20945387-20945430)
chr3 (398-441)||(26517302-26517345)
[»] chr8 (2 HSPs)
chr8 (398-443)||(14577738-14577783)
chr8 (401-430)||(14522693-14522722)
[»] chr2 (4 HSPs)
chr2 (398-443)||(2131732-2131777)
chr2 (398-432)||(27749498-27749532)
chr2 (398-431)||(45214712-45214745)
chr2 (398-430)||(38982164-38982196)
[»] chr1 (4 HSPs)
chr1 (398-443)||(27531073-27531118)
chr1 (398-441)||(13723562-13723605)
chr1 (398-441)||(23982676-23982719)
chr1 (398-428)||(32152147-32152177)
[»] chr4 (4 HSPs)
chr4 (400-443)||(50165868-50165911)
chr4 (401-443)||(29584869-29584911)
chr4 (398-428)||(41920123-41920153)
chr4 (398-443)||(54701372-54701417)
[»] chr6 (1 HSPs)
chr6 (398-431)||(22410929-22410962)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 11038907 - 11038953
Alignment:
Q  17 gaataaatggttatacaagcactcctaattgagaattagtgaaaaga 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11038907 gaataaatggttatacaagcactcctaattgagaattagtgaaaaga 11038953  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 432
Target Start/End: Original strand, 35569089 - 35569123
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggt 432  Q
    |||||||||||||||||||||||||||||||||||    
T  35569089 aacttttcttaagaaatgtgaaaaatgtaaagggt 35569123  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 38972210 - 38972253
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 441  Q
    |||||||||||||||||||||||||||||||  || ||||||||    
T  38972210 aacttttcttaagaaatgtgaaaaatgtaaaatgtgtttacata 38972253  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 440
Target Start/End: Complemental strand, 27587858 - 27587816
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacat 440  Q
    ||||||||||||||||||||||||| ||||||||  |||||||    
T  27587858 aacttttcttaagaaatgtgaaaaaagtaaagggagtttacat 27587816  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 20945387 - 20945430
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 441  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||    
T  20945387 aacttttcttaagaaatgtgaaaaatgtaaaaggtgtttacata 20945430  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 26517302 - 26517345
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 441  Q
    ||||||||||||||||||||||||||| |||||| | |||||||    
T  26517302 aacttttcttaagaaatgtgaaaaatgcaaagggaacttacata 26517345  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 14577738 - 14577783
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 443  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||    
T  14577738 aacttttcttaagaaatgtgaaaaatgtaaaggatgcttacataca 14577783  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 430
Target Start/End: Original strand, 14522693 - 14522722
Alignment:
Q  401 ttttcttaagaaatgtgaaaaatgtaaagg 430  Q
    ||||||||||||||||||||||||||||||    
T  14522693 ttttcttaagaaatgtgaaaaatgtaaagg 14522722  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 2131777 - 2131732
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 443  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||    
T  2131777 aacttttcttaagaaatgtaaaaaatgtaaaaggtatttagataca 2131732  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 432
Target Start/End: Complemental strand, 27749532 - 27749498
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggt 432  Q
    ||||||||||||||||||||||||| |||||||||    
T  27749532 aacttttcttaagaaatgtgaaaaaagtaaagggt 27749498  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 45214745 - 45214712
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaaggg 431  Q
    ||||||||||||||||||||||||||| ||||||    
T  45214745 aacttttcttaagaaatgtgaaaaatgcaaaggg 45214712  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 430
Target Start/End: Original strand, 38982164 - 38982196
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagg 430  Q
    ||||||||||||||||||| |||||||||||||    
T  38982164 aacttttcttaagaaatgtaaaaaatgtaaagg 38982196  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 27531118 - 27531073
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 443  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||    
T  27531118 aacttttcttaagaaatgtgaaaaatgcaaagggaacttacataca 27531073  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 13723562 - 13723605
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 441  Q
    ||||||||||||||||||||||||||| |||||||  |||||||    
T  13723562 aacttttcttaagaaatgtgaaaaatgcaaagggtgcttacata 13723605  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 23982676 - 23982719
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 441  Q
    ||||||||||||||||||||||||||| |||||| | |||||||    
T  23982676 aacttttcttaagaaatgtgaaaaatgcaaaggggacttacata 23982719  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 428
Target Start/End: Complemental strand, 32152177 - 32152147
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaa 428  Q
    |||||||||||||||||||||||||||||||    
T  32152177 aacttttcttaagaaatgtgaaaaatgtaaa 32152147  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 443
Target Start/End: Original strand, 50165868 - 50165911
Alignment:
Q  400 cttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 443  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||    
T  50165868 cttttcttaagaaatatgaaaaatgtaaaaggtgtttacataca 50165911  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 443
Target Start/End: Complemental strand, 29584911 - 29584869
Alignment:
Q  401 ttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 443  Q
    |||||||||||||||||||||||| |||||||  |||||||||    
T  29584911 ttttcttaagaaatgtgaaaaatgcaaagggtgcttacataca 29584869  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 428
Target Start/End: Original strand, 41920123 - 41920153
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaa 428  Q
    |||||||||||||||||||||||||||||||    
T  41920123 aacttttcttaagaaatgtgaaaaatgtaaa 41920153  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 54701372 - 54701417
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 443  Q
    |||||||||||| ||||||||||||||||||||  | |||||||||    
T  54701372 aacttttcttaaaaaatgtgaaaaatgtaaaggagacttacataca 54701417  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 22410929 - 22410962
Alignment:
Q  398 aacttttcttaagaaatgtgaaaaatgtaaaggg 431  Q
    ||||||||||||||||||||||||| ||||||||    
T  22410929 aacttttcttaagaaatgtgaaaaaagtaaaggg 22410962  T

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