View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4215_low_5 (Length: 619)

Name: NF4215_low_5
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4215_low_5
NF4215_low_5
[»] chr1 (2 HSPs)
chr1 (1-615)||(32896295-32896909)
chr1 (49-221)||(32885583-32885751)


Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Original strand, 32896295 - 32896909
Alignment:
Q  1 ttgcacaacttgaggatatgaggtttattctggctataatgtaaacgctttgtgtaaaacaaggcttcataaagtttgttttaagctacctgttttacaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32896295 ttgcacaacttgaggatttgaggtttattctggctataatgtaaacgctttgtgtaaaacaaggcttcataaagtttgttttaagctacctgttttacaa 32896394  T
Q  101 gacaaaagtttagtctagaccagaattatacaacctaggtggccatttagacaaatccattaaattacatggttatcagtatcgtatgagacatattagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32896395 gacaaaagtttagtctagaccagaattatacaacctaggtggccatttagacaaatccattaaattacatggttatcagtatcgtatgagacatattagt 32896494  T
Q  201 cgtatctcgattagttattaaactaaactcaatcgatacgaatttcttgnnnnnnnnnnnnntttgaacatgaatctcatcttgaaacttagtctattaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||    
T  32896495 cgtatctcgattagttattaaactaaactcaatcgatacgaatttcttgtatatatatattttttgaacatgaatctcatcttgaaacttagtctattaa 32896594  T
Q  301 ttctaataaagcactgcctaaatttaatttaacttgtcaannnnnnnngtcaaccttttacttttgtcattaatttgttctattattacttgaatatatg 400  Q
    |||||||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32896595 ttctaataaagcactgcctaaatttagtttaacttgtcaattttttttgtcaaccttttacttttgtcattaatttgttctattattacttgaatatatg 32896694  T
Q  401 atgtatcaacttataaatttttctgttatttatttcggttagttggaaaagatcataaaagcatagcgagaacttggaaaaaagaccataaaaacatgaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32896695 atgtatcaacttataaatttttctgttatttatttcggttagttggaaaagatcataaaagcatagcgagaacttggaaaaaagaccataaaaacatgaa 32896794  T
Q  501 aatgtagtggcttagggaatgcattagctagttgggaattgctgggcacaagaagtaaaacaatgaacttaaattgcaacttttctctcattacatgcca 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32896795 aatgtagtggcttagggaatgcattagctagttgggaattgctgggcacaagaagtaaaacaatgaacttaaattgcaacttttctctcattacatgcca 32896894  T
Q  601 atccagctctgtgtt 615  Q
    |||||||||||||||    
T  32896895 atccagctctgtgtt 32896909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 32885583 - 32885751
Alignment:
Q  49 tttgtgtaaaacaaggcttcataaagtttgttttaagctacctgttttacaagacaaaagtttagtctagaccagaattatacaacct-aggtggccatt 147  Q
    ||||||||||||||||||||| |||||||||||| ||||||  |||||||||||||||| ||||||||| ||||||||| || ||||| | |||||||||    
T  32885583 tttgtgtaaaacaaggcttcacaaagtttgttttcagctactagttttacaagacaaaaatttagtctataccagaattttataacctaatgtggccatt 32885682  T
Q  148 tagacaaatccattaaattacatggttatcagtatcgtatgagacatattagtcgtatctcgattagttattaa 221  Q
    ||||||||||     | |||||||||||| |||||| || ||  |||| |||||| ||||||||| | ||||||    
T  32885683 tagacaaatc-----acttacatggttattagtatcttacgatgcatagtagtcgaatctcgatttgatattaa 32885751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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