View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_8 (Length: 425)
Name: NF4215_low_8
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 10654940 - 10655348
Alignment:
| Q |
17 |
aatcatatggagaattgcaataatttgcaatatttgtattctatgttgattgctataagaagaaaagggatttgcagaatgagtttccatttcgtggatc |
116 |
Q |
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| T |
10654940 |
aatcatatggagaattgcaataatttgcaatatttgtattctatgttgattgctataagaagaaaagggatttacagaatgagtttccatttcgtggatc |
10655039 |
T |
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| Q |
117 |
aattataaactatcaacttcacattttggttaagagaaagttcaatgcaaaaataaacacatccaggcacaacaaaaacagttttatatccttgatttct |
216 |
Q |
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| T |
10655040 |
aattataaactatcaacttcacattttggttaagagaaagttcaatgcaaaaataaccacatccaggcacaaaaaaaacagttttatatccttgatttct |
10655139 |
T |
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| Q |
217 |
accatgagattaagcattgatattttctgcattaaagttgttgccacgtctaatatggaataaaatgatagtataataatttgagagtatatatgacaaa |
316 |
Q |
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| T |
10655140 |
accatgagattaagcactgatattttctgcattaaagttgttgccacgtctaatatggaataaaacgatagtataataatttgagagtatatatgacaaa |
10655239 |
T |
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| Q |
317 |
tgtttgtattatgatgagaaatatcagatattataccttaactgcacatcttgatgacatgtgatgttcatttcggcataaaaataagtatcaagagcca |
416 |
Q |
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| T |
10655240 |
tgtttgtattatgatgagaaatatcagatattataccttaactgcgcatcttgatgacatgtgatgttcatttcggcataaaaataagtatcaagagcca |
10655339 |
T |
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| Q |
417 |
cattagaaa |
425 |
Q |
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| T |
10655340 |
cattagaaa |
10655348 |
T |
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