View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4215_low_9 (Length: 406)
Name: NF4215_low_9
Description: NF4215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4215_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 406
Target Start/End: Complemental strand, 32242301 - 32241900
Alignment:
| Q |
14 |
agggaccaatacttaaaaatcttttccaactcaaac---------------ccctagaaagtggaagctcatgatcctctttctcattagacggtggtct |
98 |
Q |
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| T |
32242301 |
agggaccaatacttaaaaatcttttccaactcaaacggcaatcgatgatgtccctagaaagtggaagctcatgatcatctttcttattagacggtggtct |
32242202 |
T |
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| Q |
99 |
aattgatgtcgattcaacaaaattaagcaaaaaataatatgaattgactttgatccctaaacacacatttataatannnnnnnnatgtttgtaaccaaaa |
198 |
Q |
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| T |
32242201 |
aattgacgtcgattcaacaaaattaagcaaaaaataatatgaattgagtttgatccctaaatacacatttataata--ttttttatgtttgtaaccaaaa |
32242104 |
T |
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| Q |
199 |
agggtattaannnnnnnnnatatatagtttgtactatgaataaaaatttgtcttatgatttagtgagggaagtctcttactacttgttttgtccggtacc |
298 |
Q |
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| T |
32242103 |
agggtatt---ttttttatttttatagtttgtacgatgaataaaaatttgtcttatgattttgtgagggaagtctcttactactt-ttttgtccggtacc |
32242008 |
T |
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| Q |
299 |
tataacgagtttgtaaataaaatatagggtgc-nnnnnnnngtgttcaatcccttatattttttatcgaatcaaactcacccaacaaaatatcgaggtag |
397 |
Q |
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| T |
32242007 |
tataaccagtttgtaaataaaatatagggtgcaaaaaaaatgtgttcaatcccttat-ttttttatcgaatcaaacacacccaacaaaatatcgaggtat |
32241909 |
T |
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| Q |
398 |
tttttatac |
406 |
Q |
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| T |
32241908 |
tgtttatac |
32241900 |
T |
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