View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4216_high_1 (Length: 519)
Name: NF4216_high_1
Description: NF4216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4216_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 51915482 - 51915971
Alignment:
| Q |
18 |
ggtagtgtgcagtgagtacagagtatcttcatatacacccagaactgaatcagaactacgcagttcttgcacttgtttagtgtcaagggaaacagcgaaa |
117 |
Q |
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| T |
51915482 |
ggtagtgtgcagtgagtacagagtatcttcatatacaccgagaactgaatcagaactacgcagttcttgcacttgtttagtgtcaagggaaacagcgaaa |
51915581 |
T |
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| Q |
118 |
ccgttgtaagcgtgagtgtaggtgtaaagtagagaatc---agaagaagaagattggagaatgggagagtacatggatgcatttttgttgtgtttcatgt |
214 |
Q |
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| T |
51915582 |
ccattgtaagcgtgagtgtaggtgtaaagtagagaatcagaagaagaagaagattggagaatgggagagtacatggatgcatttttgttgtgtttcatgt |
51915681 |
T |
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| Q |
215 |
gaactatgtaagnnnnnnngttggtcaatgccattactgttatagacaataatagcattacgaggtagaagagaatatacaaagttgaggttgaggattt |
314 |
Q |
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| T |
51915682 |
gaactatgtaagtttttttgttggtcaatgccattactgttacagacaataatagcattacgaggtagaagagaatatacaaagttgaggttgaggattt |
51915781 |
T |
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| Q |
315 |
catggcttcttgatttgtttttctttaacc-aagcaattacatcagaagcaatattaatgttaatgtttataatatgaatgattgtatatgaaaattgaa |
413 |
Q |
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|||||||||||||||||||||||||||||| || | || | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51915782 |
catggcttcttgatttgtttttctttaacctcagaatgcactgactatgcaatattaatgttaatgtttataatatgaatgattgtatatgaaaattgaa |
51915881 |
T |
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| Q |
414 |
atgtaagaagatacaaatgcaattcaccagaaatcaacttcactcactctatcaatcaattatcatcagctgcttggactttataaacgagaataat |
510 |
Q |
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| T |
51915882 |
atgtaagaagatacaaatgcaattcaccagaaatcaatt----tcaccctatcaatcaattatcatca---gcttggactttataaacgagaataat |
51915971 |
T |
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