View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4216_high_2 (Length: 450)

Name: NF4216_high_2
Description: NF4216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4216_high_2
NF4216_high_2
[»] chr2 (3 HSPs)
chr2 (15-194)||(39276671-39276850)
chr2 (113-208)||(39270223-39270318)
chr2 (287-343)||(8966730-8966786)
[»] chr1 (1 HSPs)
chr1 (245-343)||(6430687-6430785)
[»] chr8 (2 HSPs)
chr8 (299-354)||(25016797-25016852)
chr8 (299-343)||(35578241-35578285)
[»] chr7 (1 HSPs)
chr7 (244-354)||(35041697-35041807)
[»] chr4 (1 HSPs)
chr4 (309-354)||(38909284-38909329)
[»] chr3 (1 HSPs)
chr3 (244-292)||(52750324-52750372)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 39276850 - 39276671
Alignment:
Q  15 aatatatcatcttactcttaggcttgttggctgttagggagacaagttccaatatcagctaatatctttcagttgaagacaaagtttgctaaatatatcg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39276850 aatatatcatcttactcttaggcttgttggctgttagggagacaagttccaatatcagctaatatctttcagttgaagacaaagtttgctaaatatatcg 39276751  T
Q  115 tgccaagatcattcaggtggccttgccaaacttaaattctctttttccatagcaatgatagaagccaccctctcataaac 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39276750 tgccaagatcattcaggtggccttgccaaacttaaattctctttttccatagcaatgatagaagccaccctctcataaac 39276671  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 39270318 - 39270223
Alignment:
Q  113 cgtgccaagatcattcaggtggccttgccaaacttaaattctctttttccatagcaatgatagaagccaccctctcataaacctgtagcaccacat 208  Q
    |||||| |||||||||||| ||| ||| | | ||| |||||||  ||||||| |||||||| | ||| ||||||||||||||||| | ||||||||    
T  39270318 cgtgcctagatcattcagggggcattgtctagcttgaattctccctttccatggcaatgatggtagcaaccctctcataaacctgaaacaccacat 39270223  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 8966730 - 8966786
Alignment:
Q  287 ttttccgaaccatgaaacgaaccttattataaatcataagatacattaccaataaaa 343  Q
    ||||||||| | ||||| |||  |||||||  |||||||||||||||||||||||||    
T  8966730 ttttccgaatcgtgaaatgaatattattatgcatcataagatacattaccaataaaa 8966786  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 343
Target Start/End: Complemental strand, 6430785 - 6430687
Alignment:
Q  245 tggttatcaaatccagattcaaatagtgaaccagaagatcttttttccgaaccatgaaacgaaccttattataaatcataagatacattaccaataaaa 343  Q
    ||||||||||||| |||||||||| ||||| || |||| || |||||| ||  ||||| | || |||||||| ||||||||||||||||| ||||||||    
T  6430785 tggttatcaaatcgagattcaaattgtgaatcaaaagacctattttccaaatgatgaatcaaatcttattatgaatcataagatacattagcaataaaa 6430687  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 25016852 - 25016797
Alignment:
Q  299 tgaaacgaaccttattataaatcataagatacattaccaataaaaatgtcattttt 354  Q
    |||| |||| |||||||| |||| ||||||||||| | ||||||||||||||||||    
T  25016852 tgaatcgaatcttattatgaatcctaagatacattcctaataaaaatgtcattttt 25016797  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 35578241 - 35578285
Alignment:
Q  299 tgaaacgaaccttattataaatcataagatacattaccaataaaa 343  Q
    |||| |||| ||||||||||||| |||||||||||||||| ||||    
T  35578241 tgaatcgaatcttattataaatcgtaagatacattaccaagaaaa 35578285  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 35041807 - 35041697
Alignment:
Q  244 atggttatcaaatccagattcaaatagtgaaccagaagatcttttttccgaaccatgaaacgaaccttattataaatcataagatacattaccaataaaa 343  Q
    |||||||||||||| ||||||||||  |||| | |||||  ||| ||||||| |||||| | ||| ||||||| |||   ||||| ||||  ||||||||    
T  35041807 atggttatcaaatcgagattcaaatcatgaatccgaagacatttgttccgaatcatgaatcaaactttattatgaattggaagattcattgtcaataaaa 35041708  T
Q  344 atgtcattttt 354  Q
    ||| |||||||    
T  35041707 atgccattttt 35041697  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 38909284 - 38909329
Alignment:
Q  309 cttattataaatcataagatacattaccaataaaaatgtcattttt 354  Q
    |||||||| |||| ||||||||||| ||||||| ||||||||||||    
T  38909284 cttattatgaatcgtaagatacattgccaataataatgtcattttt 38909329  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 52750372 - 52750324
Alignment:
Q  244 atggttatcaaatccagattcaaatagtgaaccagaagatcttttttcc 292  Q
    |||| |||||||||||||||||||| ||||| | ||||| |||||||||    
T  52750372 atggctatcaaatccagattcaaattgtgaatcggaagaccttttttcc 52750324  T

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